si:ch73-233f7.1 (LOC103359310,LOC104951883,LOC102312450)


Basic Information

Item Value
gene id si:ch73-233f7.1
gene name LOC103359310,LOC104951883,LOC102312450
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 20015208 ~ 20022263 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039814288.1
CCAGCTCCTCCGAGTGTCTAATACACTGGAAAATCAAAGTGCGAGCCTCCCCCGTTCACACACCACCGGTGTTGCGCGTGGAgcacaacacagagagagagggagagagagagagagagagagaggtgctttCACTTTCTTCACCTCTCCCGTCCCCTCAGCTTAACTATCCAGTAAACTTATCTGTGCACATAGGTGTTACAAACTTAGAtctgaagattttttttatttgggacAGTCTGTGCGTTTGTATGTACTTTTTAGCTACAGTTGAATGGCTTTATGAGGCGAAAGATGTCTGGGTGAGGTGATTTTACGCACGCCGCTGAAATGGATCACAGACTCCCCAAAGGCAGTTGGGTACCGGTGACTGGGCTGGTTGTATGTCTgcttctgtgtgcgtgtgtagtgGACCTGGTTCTTGCGCAAATTCGGTACTCCATTCCAGAAGAGCTGGAGCATGGAGCTTTTGTGGGCAACATCGCCGAAGACCTGGGCTTGGATGTGGCCAAGCTGTCAGCCCGCCGGTTTCGTATAGTCTCCGGCGCAAAGAGGCAGTATTTAGAAGTGAACTTGGAGAATGGTATTCTCTTCGTCAACGAAAAGATAGACAGAGAGGAGCTGTGTGAACGAAGCCCGAACTGTTTTTTACACTTACAAGTGGTCATTGAAAATCCATTAGAACTGTACAGAGTGGAAGTGGAGATTTTAGATGTGAATGACAACTCCCCCAGTTTCCCATGGAGCGAGTTTAATCTTGACATCACAGAGTCGGCTGCGCCAGGCTCTTGTTTCCCGTTAGAGAGTGCACAGGACCAGGACGTGGGCACCAACTCTCTGCACTCCTACCAGCTAAGCGCAAACGAGCACTTTGTACTGAATATCCAGACGCGCAATGATGGAAGCAAGTTTGCGGAGCTCGTGCTGGACACCCCACTGGACCGGGAACAGCAGAAAAAGCACGAAATGGTTTTGACTGCCTTTGACGGTGGGTCACCGGAACGCTCTGGGACAGCACTGATAACTATTACAGTGTTAGACGCAAACGATAACGTGCCCGTGTTTGACCGATCAGTGTACCGGGCGAGTCTGGTGGAGAACGCACCGAGGGGGACGCTGGTGTTGAAGCTGAACGCCACAGACCTGGATGAGGGCTCGAATGGGGAGGTGACCTACGCGTTTAGCGGGCACGCACCCCTCAAGGTGCGCGAACTGTTCAGCGTGGACCCGTACACGGGTGAAATCCGAGTGAAGGGCATTGTGGACTATGAGAAAGCCAGCGTATATGAGCTGTATGTGCAGGCAAAAGACAGGGGACCGTCGGCTGTGGCTGTACACAGCAAAGTGCTGGTAGACATCCTAGATGTGAATGACAACGCGCCCGAAGTCATCCTCACATCAGTGTCCACTCCTGTCCAAGAAGATGCGCCACCAGGCACGGTGATAGCTGTTATCAGTGTAATGGATCGGGACTCGGGAGAGAACGGAAACGTTGACTGCCAGATTCCGAGCAACGTCCCCTTTCAGCTCCATTCATCTTTTACAAACTATTATACTCTGGTGACAAGCGAGTTTCTGGACAGGGAAACTGTGTCAGAGTACAACATCACCCTCACAGCCCGAGATTTGGGCTCTCCTTCGCTCTCTACCAGGAAAACTATCCTTGTTCAAGTATCAGACATTAATGACAACCCCCCGCGATTCTCTCAACCTTCATACACAGTTTATGTGACCGAGAACAATGCCCCGGGCGCTTCCATTTGCTCTGTAACAGCATTCGACCCCGATTCTAATCAGAACGCCTATCTGTCTTATTCTATTCTCGAGGGTCAGATTCAGGGCATGCCCGTGTCCACTTATGTCTCAATCAACTCTGACAACGGCAATATCTACGCACTGCGCTCTTTTGATTATGAGCAACTTAGAAACTTTCAGATTCTGGTACAGGCGCAGGACGCTGGTTTCCCCCCTCTCGCCAGTAATATCACAGTCAACGTCTTTGTCTTGGACCAGAACGACAATTCACCTGTTATTGTATCCCCGCTGCCCAAAAACGGCACCGTGGCCACAGAGGTGGTTCCGCGGTCAGTAGATGCTGGGTATCTGGTTACCAAAATAACAGCGTTAGACGCGGACGCAGGGCAAAACTCCCGGCTGTCCTATCAGGTGTTGCAGGCTACAGACCCAGGGCTGTTCAGTGTGGCGCTGTACACGGGCGAAATCAGGACTATTCGCCGGCTAGTGGAAAAAGACGCAACAAGGCAAAGACTGGTAATATTAGTCAAGGACAATGGGCAACCGCCGCTCTCCGCCACGGTCTCCATTGTCCTCACAGTGGTGGACAGCGTGCCTGAGTCGCTGTCAGATTTCGGAGACCTCACACTCAGCCCACAGCCCCCCTCAAACCTCGCTCTCTACTTGATCGTGTCACTGAGCACAATATCTTTAATATTCCTTGTGGCTATTATCGTGCTGGCTGTGGTCAAGTGCTACAAGGACAGGGAGACCATCAGCGGGTACAACCTCCCCCCGTtcgcctgctgctgctgcggggGGTTTCAGCCCGATCCGCCTCCGGAGGTGTTCAAAAAATCCAACCTCAACCTACAGATTTCATCCGCGGCCAAAGTGCCCACGAACTGTATGGAGGTGAATGGAAACAGCAGTCTCTCTCAGTCATATTGTTATAAAGTCTGCCTGACTCCCGAATCTGCCAAAAGTGACTTTATGTTTCTGAAGCCGTGCAGCCCCGGCAGCACGCCGAGGAACAACGAAGCGAAGAGCGCAGAAAACTCGTGGAACGCGCAAAGCCGGAGCGCATCTGTGAACAACGGAGCAACTACTCCCAATGAGCTGAAGCAGCCAAACACAGACTGGACTCTCACAAAGAATCAAAACTCCTCCATTAAAAGTTATAACTCTATCAACATGGATGGCACCCTCATGCGTAAGGCAATGCATGCAGACCCAGAAAACTATGTCACGTCCATGGGGCCTGGACAGTACTGGACTTGGGGTACTCACATGAGAGGGATGAAAGACTATAAGATGTCTCCTTCAACCAGTGGGGTCCCCTCTCGCCCCTGGACTCCTCGGTGCACACCTCctccacaacagcagcagccatcaATCCCACCCCACCCTCACCCGCATCCTCCCCCACACCCACCACCTGACTACCACCACAACGTGTACATCCCTGGGACACCATCAGGATTTTGCACCCTGAGGCCTGCAGCACCCCGAAGTGAGCTGGATGTCCACAATTCCTTCTCTACCTTTGGCAAGAAGCGACGTCTTCAGATGTCCCCCCAGGGAGAGGCTGCGATTATAAATAATGACCTGTACAATGACTGACTTTTCAATGACTTTCTGAATGGATGATTAAAATGACAGATAACCTCATATGAATAGGAAGAGACCATTCAGTACATACATTTATgaacaaatgatttaaaagtgggaTGAAAAATACAGAGCATTTGCAAAAGAGAAATAATGAATAAACAATCCATTATGGCAAACATGCTGAATGGAAATGAAGTCTGATGGCTATTTATGTGACATGCAACTGTAACATGGTCAATATGTGTctgcctattattattattattattattattattattattattattattactactatcaTTATTATTTAGACAATCAAACTGGAGCAGCAATTACAtccaaaatgttttgaaaaagcATTAGTGGACAATAATTTTGCACATCCTTAtgaatttatatttttgatttcatgaaaagaaaaggtgttttcttttttgtttgtttgctaaCAGAGTTTTTGTGAATATGACACATAGTAGGATAATGTATATGCAAGCTGCAACATGATGCAGACAACTGTAAAGAGGGGAGGTTCTccacacatgtactgtatacatttatgaaaataaagtatttttttca
>XM_039814290.1
cCACCAGCTCCTCCGAGTGTCTAATACACTGGAAAATCAAAGTGCGAGCCTCCCCCGTTCACACACCACCGGTGTTGCGCGTGGAgcacaacacagagagagagggagagagagagagagagagagaggtgctttCACTTTCTTCACCTCTCCCGTCCCCTCAGCTTAACTATCCAGTAAACTTATCTGTGCACATAGGTGTTACAAACTTAGAtctgaagattttttttatttgggacAGTCTGTGCGTTTGTATGTACTTTTTAGCTACAGTTGAATGGCTTTATGAGGCGAAAGATGTCTGGGTGAGGTGATTTTACGCACGCCGCTGAAATGGATCACAGACTCCCCAAAGGCAGTTGGGTACCGGTGACTGGGCTGGTTGTATGTCTgcttctgtgtgcgtgtgtagtgGACCTGGTTCTTGCGCAAATTCGGTACTCCATTCCAGAAGAGCTGGAGCATGGAGCTTTTGTGGGCAACATCGCCGAAGACCTGGGCTTGGATGTGGCCAAGCTGTCAGCCCGCCGGTTTCGTATAGTCTCCGGCGCAAAGAGGCAGTATTTAGAAGTGAACTTGGAGAATGGTATTCTCTTCGTCAACGAAAAGATAGACAGAGAGGAGCTGTGTGAACGAAGCCCGAACTGTTTTTTACACTTACAAGTGGTCATTGAAAATCCATTAGAACTGTACAGAGTGGAAGTGGAGATTTTAGATGTGAATGACAACTCCCCCAGTTTCCCATGGAGCGAGTTTAATCTTGACATCACAGAGTCGGCTGCGCCAGGCTCTTGTTTCCCGTTAGAGAGTGCACAGGACCAGGACGTGGGCACCAACTCTCTGCACTCCTACCAGCTAAGCGCAAACGAGCACTTTGTACTGAATATCCAGACGCGCAATGATGGAAGCAAGTTTGCGGAGCTCGTGCTGGACACCCCACTGGACCGGGAACAGCAGAAAAAGCACGAAATGGTTTTGACTGCCTTTGACGGTGGGTCACCGGAACGCTCTGGGACAGCACTGATAACTATTACAGTGTTAGACGCAAACGATAACGTGCCCGTGTTTGACCGATCAGTGTACCGGGCGAGTCTGGTGGAGAACGCACCGAGGGGGACGCTGGTGTTGAAGCTGAACGCCACAGACCTGGATGAGGGCTCGAATGGGGAGGTGACCTACGCGTTTAGCGGGCACGCACCCCTCAAGGTGCGCGAACTGTTCAGCGTGGACCCGTACACGGGTGAAATCCGAGTGAAGGGCATTGTGGACTATGAGAAAGCCAGCGTATATGAGCTGTATGTGCAGGCAAAAGACAGGGGACCGTCGGCTGTGGCTGTACACAGCAAAGTGCTGGTAGACATCCTAGATGTGAATGACAACGCGCCCGAAGTCATCCTCACATCAGTGTCCACTCCTGTCCAAGAAGATGCGCCACCAGGCACGGTGATAGCTGTTATCAGTGTAATGGATCGGGACTCGGGAGAGAACGGAAACGTTGACTGCCAGATTCCGAGCAACGTCCCCTTTCAGCTCCATTCATCTTTTACAAACTATTATACTCTGGTGACAAGCGAGTTTCTGGACAGGGAAACTGTGTCAGAGTACAACATCACCCTCACAGCCCGAGATTTGGGCTCTCCTTCGCTCTCTACCAGGAAAACTATCCTTGTTCAAGTATCAGACATTAATGACAACCCCCCGCGATTCTCTCAACCTTCATACACAGTTTATGTGACCGAGAACAATGCCCCGGGCGCTTCCATTTGCTCTGTAACAGCATTCGACCCCGATTCTAATCAGAACGCCTATCTGTCTTATTCTATTCTCGAGGGTCAGATTCAGGGCATGCCCGTGTCCACTTATGTCTCAATCAACTCTGACAACGGCAATATCTACGCACTGCGCTCTTTTGATTATGAGCAACTTAGAAACTTTCAGATTCTGGTACAGGCGCAGGACGCTGGTTTCCCCCCTCTCGCCAGTAATATCACAGTCAACGTCTTTGTCTTGGACCAGAACGACAATTCACCTGTTATTGTATCCCCGCTGCCCAAAAACGGCACCGTGGCCACAGAGGTGGTTCCGCGGTCAGTAGATGCTGGGTATCTGGTTACCAAAATAACAGCGTTAGACGCGGACGCAGGGCAAAACTCCCGGCTGTCCTATCAGGTGTTGCAGGCTACAGACCCAGGGCTGTTCAGTGTGGCGCTGTACACGGGCGAAATCAGGACTATTCGCCGGCTAGTGGAAAAAGACGCAACAAGGCAAAGACTGGTAATATTAGTCAAGGACAATGGGCAACCGCCGCTCTCCGCCACGGTCTCCATTGTCCTCACAGTGGTGGACAGCGTGCCTGAGTCGCTGTCAGATTTCGGAGACCTCACACTCAGCCCACAGCCCCCCTCAAACCTCGCTCTCTACTTGATCGTGTCACTGAGCACAATATCTTTAATATTCCTTGTGGCTATTATCGTGCTGGCTGTGGTCAAGTGCTACAAGGACAGGGAGACCATCAGCGGGTACAACCTCCCCCCGTtcgcctgctgctgctgcggggGGTTTCAGCCCGATCCGCCTCCGGAGGTGTTCAAAAAATCCAACCTCAACCTACAGATTTCATCCGCGGCCAAAGTGCCCACGAACTGTATGGAGGTGAATGGAAACAGCAGTCTCTCTCAGTCATATTGTTATAAAGTCTGCCTGACTCCCGAATCTGCCAAAAGTGACTTTATGTTTCTGAAGCCGTGCAGCCCCGGCAGCACGCCGAGGAACAACGAAGCGAAGAGCGCAGAAAACTCGTGGAACGCGCAAAGCCGGAGCGCATCTGTGAACAACGGAGCAACTACTCCCAATGAGCTGAAGCAGCCAAACACAGACTGGACTCTCACAAAGAATCAAAACTCCTCCATTAAAAGACTGGTATCTTGTTTGCAGTTATAACTCTATCAACATGGATGGCACCCTCATGCGTAAGGCAATGCATGCAGACCCAGAAAACTATGTCACGTCCATGGGGC

Function

NR:

description
protocadherin beta-16-like

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K16493 PCDHA; protocadherin alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039814288.1 True 3933 mRNA 0.49 4 20015211 20022263
XM_039814290.1 False 3017 mRNA 0.51 3 20015208 20020903

Neighbor

gene id symbol gene type direction distance location
fbxw11a fbxw11 coding upstream 51960 19942409 ~ 19963248 (+)
etf1a etf1,LOC108430956 coding upstream 74363 19932847 ~ 19940845 (+)
bicc2 LOC104951703,LOC100700004,LOC102206312,LOC101472209,LOC102314010 coding upstream 419709 19584399 ~ 19595499 (+)
LOC120566456 NA coding upstream 486932 19507295 ~ 19528276 (+)
LOC120566454 chrna9,LOC103365636,LOC102230700 coding upstream 510867 19498950 ~ 19504341 (+)
LOC120566322 NA coding downstream 12130 20034393 ~ 20040380 (+)
LOC120566529 LOC103375284,LOC102199591,LOC108242356,LOC106933149,LOC106516975 coding downstream 42723 20064986 ~ 20067565 (+)
LOC120567232 LOC103375287 coding downstream 46200 20068463 ~ 20071057 (+)
LOC120566530 LOC103375287 coding downstream 50092 20072355 ~ 20074975 (+)
LOC120566532 LOC103375285,LOC102798382,LOC102309450,LOC101072791,LOC101076589,LOC106516975 coding downstream 53490 20075753 ~ 20078369 (+)
LOC120567444 NA non-coding upstream 16407 19973785 ~ 19998801 (+)
LOC120566743 NA non-coding upstream 60245 19950757 ~ 19954963 (+)
G106351 NA non-coding upstream 73493 19940938 ~ 19941715 (+)
LOC120566488 NA non-coding upstream 166930 19844839 ~ 19848278 (+)
G106218 NA non-coding upstream 413115 19515958 ~ 19602093 (+)
LOC120567249 NA non-coding downstream 251570 20273833 ~ 20275911 (+)
G106577 NA non-coding downstream 688246 20710509 ~ 20731673 (+)
G106679 NA non-coding downstream 1078221 21100484 ~ 21100835 (+)
G106684 NA non-coding downstream 1085235 21107498 ~ 21108359 (+)
G106707 NA non-coding downstream 1170803 21193066 ~ 21194849 (+)
G106237 spock1 other upstream 362734 19604840 ~ 19652474 (+)
adra2db LOC102798575,LOC100708556,LOC101479598,LOC102300678 other upstream 1045262 18963934 ~ 18969946 (+)
gabra6a gabra6,LOC102779400,LOC100710435,LOC102294139 other upstream 2115477 17890170 ~ 17899731 (+)
G105677 NA other upstream 2329509 17682919 ~ 17685699 (+)
LOC120567259 LOC106925651,LOC106940816,LOC108240559,LOC106591805,LOC102211808,LOC100691901,LOC106613062 other upstream 2550986 17458247 ~ 17464222 (+)
LOC120566323 LOC102781894,LOC101481808 other downstream 6600 20028863 ~ 20061338 (+)
G106465 LOC104955902 other downstream 329458 20351721 ~ 20352167 (+)
hrh2a LOC103354784,LOC104948895 other downstream 912466 20934729 ~ 20947415 (+)
selenoh selenoh other downstream 1257424 21279687 ~ 21283229 (+)
zdhhc5b zdhhc5 other downstream 1267268 21289531 ~ 21350978 (+)

Expression


Co-expression Network