RNA id: TU142662


Basic Information

Item Value
RNA id TU142662
length 2499
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id G106218
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 19515958 ~ 19602093 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AACACTTGTAACATACTGCTAACTCTCGCAGATGCAGCTTCACTGAAAGGAAAACTGGAAGTCGGGCCCAGAATTCATGCAAGGTAAGCATTAAGGTGGATACAATGCAGGAAAAATGCAGCAGACTGCATGTGATGAAAGATGAACGAATGAGACATTTTCTTGACAGCTTTTGTCATGTAGCCTGATGACAGAAGACGCTGCACTAGCCAAGCTCCCAGAATTGGGTGATTGTACCCTGCACAGCTTCTGGCATAATTTGATGCACAGTTAAGCCCATTGTCTATTGTATCTGACAGACTGTGTTGTGAACTGCTGAATAGGCTGTTTCAAGCCAGAAGATTCAGTCGTGTTTTAGCCTCCGAATGTTGGtacaatgtgtttttaaagtgcCGAGTGGGCTCTTTCAAGGCAGTGGGGTCAGCTGTCCCATTAGCCAGCGATATTACAATAACACTCATTAAGCTTTTATGTTCTTTTGGGCACTGCATGGCCTTGTGATTCTCCTCTCTCCAAGGcaagtgatttcttttttttgctgttacCATTTATGTCTGTTTCCAACAGGAGAGGCTGCTTTCTCAAGGTTGGAAAGGTCAGAATTGATGGAGGGCTTTGATTGTTCTACTGCAGAGAAGCCTGCGCTtcagagaaaataaaaccaaaaagcaTGTGAAACTCATATAAATGGGTTTGTGGTTTCACAGTGAggaaagagatgtgtttttatttcatcatgATTCGGTAAAATAAGATGAAATGCGATCGAGGCTTGTGCCAAAAATGGTATAGCAGGAGAACAAGAGACACATGGACACAGACCTATAAGGTTCAAAAGACACCCAAAGTGCCACTTTACTTAAATTTTCAAAGTTACAAATAAAAATTCACTTAGTTGACATGGTGAGGATTTCAATTTTAAATCACGAACATATCCAGTGTTGGGAGGCAGAACAGAGCCTCTTCTCTGCTCGCCCGACTTCATGTGTCCTCCCAGCTCAGGAGCAGCTTCTTCCTCTAGTGTCTATGCACAGTCAAACAGCCTCAGAAGCCCTACTGATCAACTAGTACAAGAATAGCTGGCTGAAATGCCACAGATTTGGACTGTAGGCCTTGCAGTTCACTTTTCTACACTGCTATCGCTCTGCAATGCAACTTCCTACCTCCTGAGATTGGGAGAAGAACCAAAAAGACACTAGACAGCATCAACATAGCAACAAAGTATTGTAGCAGCCAAATAGGCATCACTTTCTGTTTGAGATGCATAGAGCTAGACCTGGCCAGGTTAATCTCTCTTTTACAGAAACACGATGAGAAACATGCAACAACGACGACAATACATCATTAATCTCATTGCTTCCTGGGCTTTCTGGGACATTCAAGATCAACGGTTAAATAATTTACAATCCTTCATGaaataacagagagagagagagagagagagatagagagagagagagagagagagagagagagagagagagagagagagatctcagAGCCTGGGAACGTGTTGTGGAAACACCTTTGAACACTGGAAGGAGCCTGACGGTAGAACACAGAACATGAGATTGCAACCGCTGAAGTACAGGGAGGGTTTAATCCACAATCTGGCCTTCCTGAAGGAAACATATTTACATCCAATACATCAGCTAATGTATCTGGGCTCACAGACTAACCAGAGGCTCTGACATGGACATACAGAGAtagcagagagagggacaggatataagagaaaggggagatagaGGAGTAATAGAGAAAATAGAGAAGCATGTCCGTGTTAGAAGAGGGTAAAGATTGCAGGTTTGGGGGAAGGTAGAGGCAGAAAGTGGACAGCTTGAGCAGAATTCAGGATCTTGACAGTTGTTGAAATCTAATAGGTTCTGTGTTTTCCATCTGAGGAAAAAGTGAAACACATGAAGAGGATGAGGTTCGGATGAGGTTCACTGAAGAGAGAGATATGGATAAGGGACAGGGAAAAACAGAGCAAGTTCAGGAGCCAAAAGATGGACTGCTTCCAAAGTAAGTGGAGGAGGAGACATTGGAATGGCTTCAGATCTGTGCTGAGTTAACGGAGTTTCCTGGTCGGCTGATGGCAGAATTAAATGGAGCGGAGCTACCACACGTAGCCAGTCTCGTCGTCCTTATCGTCTTCCTCGTCCTCATCGTCCTCGATGGCTCCTCGGGGGTGAATCCGGCCCCGTCTCTTCTTCTGCCGGCTCCGCCCGTTCTGTGAGGGCTCCTCCTCCTGGTCGTCAAGGAGAATGACGGCGCCGCCACTGCCAAAGTCCCCTGATGTCTCCTGGTCCTCATCGCAGTTAGGGTTGCCTTGTTTTCTGGAGCCAGCGATCTCGTTGCCATATTTGTCCACACACCAACACTGGCCGGTGCTGCTGTGACACTGGGTTGGTTTGAAGTAGCCCTCCTCGGTACAACGGGGAATATAAAAGCCTATGAGGCTCTTCCTTCGACTCTGGTTCTGGATCCTGCTCTTCT

Function

GO:

id name namespace
GO:0021591 ventricular system development biological_process
GO:0021592 fourth ventricle development biological_process
GO:0030902 hindbrain development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU142641 lncRNA upstream 180761 19416347 ~ 19416775 (+) True G106199
TU142607 lncRNA upstream 259965 19331708 ~ 19337571 (+) True G106183
XR_005640449.1 lncRNA upstream 302456 19294298 ~ 19295080 (+) True LOC120566719
TU142570 lncRNA upstream 302502 19294321 ~ 19295034 (+) False LOC120566719
TU142551 lncRNA upstream 317054 19274688 ~ 19280482 (+) True G106148
TU142687 lncRNA downstream 2747 19604840 ~ 19652474 (+) True G106237
XR_005640411.1 lncRNA downstream 242746 19844839 ~ 19848278 (+) True LOC120566488
TU142833 lncRNA downstream 338845 19940938 ~ 19941715 (+) True G106351
XR_005640458.1 lncRNA downstream 348664 19950757 ~ 19954963 (+) True LOC120566743
XR_005640570.1 lncRNA downstream 371692 19973785 ~ 19998801 (+) True LOC120567444
XM_039812686.1 mRNA upstream 2037 19584399 ~ 19595499 (+) True bicc2
XM_039812935.1 mRNA upstream 69260 19508520 ~ 19528276 (+) False LOC120566456
XM_039812933.1 mRNA upstream 69441 19507295 ~ 19528095 (+) True LOC120566456
XM_039812934.1 mRNA upstream 69441 19507673 ~ 19528095 (+) False LOC120566456
XM_039812925.1 mRNA upstream 93195 19498950 ~ 19504341 (+) True LOC120566454
XM_039813837.1 mRNA downstream 330754 19932847 ~ 19940845 (+) True etf1a
XM_039813839.1 mRNA downstream 331034 19933127 ~ 19940845 (+) False etf1a
XM_039813360.1 mRNA downstream 340316 19942409 ~ 19963248 (+) True fbxw11a
XM_039814290.1 mRNA downstream 413115 20015208 ~ 20020903 (+) False si:ch73-233f7.1
XM_039814288.1 mRNA downstream 413118 20015211 ~ 20022263 (+) True si:ch73-233f7.1
TU142049 other upstream 1704006 17890967 ~ 17893530 (+) False gabra6a
TU141898 other upstream 1911837 17682919 ~ 17685699 (+) True G105677
TU141805 other upstream 2237275 17357929 ~ 17360261 (+) False LOC120566324
TU141725 other upstream 2451677 17141983 ~ 17145859 (+) True G105542
TU141716 other upstream 2469751 17126355 ~ 17127785 (+) True G105536
TU142686 other downstream 2747 19604840 ~ 19605773 (+) False G106237
XR_005640374.1 other downstream 440938 20043031 ~ 20061338 (+) False LOC120566323
TU143018 other downstream 749628 20351721 ~ 20352167 (+) True G106465
XR_005640584.1 other downstream 1846711 21448804 ~ 21461450 (+) False stx3a
TU143990 other downstream 3260097 22862190 ~ 22865676 (+) True G107163

Expression Profile