RNA id: XM_039814326.1


Basic Information

Item Value
RNA id XM_039814326.1
length 2947
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC120567362
representative False

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 8339416 ~ 8346534 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTAATTGGATTGTAAAATCAATATCTGGTCAATTATATCAAAATGAATAATTGCAAAAATCATTAGTGTGTTATACAAACAAATGAAACTTATTCTGACTTTTGAGACTGAGTATTTAGATGTGTGTTGTTGGTCATTTTGGGTAATAAAAACATAACTGAggttatgaatgacatcttttggcAGACACGGACATATTTATGATTGAATTCTCATATGGTGATAAGACAATTGATTGACGGACAAGACCAGTAAGAGAACTGGCAGAACAATAGGCAAGGCCTAAAGAATTAATCTACGAAACTGATAGCACGTTTCTTGATTAAAGAGGCGGACTGCAGAAGTAAATTAAATAGTTAACTATTTAAGAGATTTTGACTGCAGGGTCGCACCGGGTTTTTCATACAAGTTTCccgaacaaaaacaaatagtctATACTCTAAGTGAGTGCTGGACCCTTTAAGAACAACCTGCAGGACAGTCTGGGTTGTAACGATACTCTAAACAAGTTCTGAACCTTTTAAGGACAACCTGCAGGACGGTCTGGGTCGTAACCTTACTCTAAAAAGAGCCTCTTGattatttagagacagactgcaACAAGGCGAAAACATACTAAATAGGTCAAGTTATTTGACTATTAAGTTGATTTCGTCCGCAGGGCTGTACACGGGTTTTCACGCAAGTTTCCCGAACAAATAACCTCGCGGtgtggtgacgatcacatcgaacaaagacatagtatactataaagTCCAAGAATCAATTATGGGAAACGAAATTTCCCGTTCCAGTGATGTAACTGGACCCATAGTGGATGAAATGACTCATAAACATGGACCGGATTGTTTGCGGTGTCTATCTTATTGGTCTAAAAGCTTTGGCTTTCCGCCAAATGGTTCCCTGAGTGTAGCGAAGCTCAGGATGCTAAAATTAGATCTacagacagaggagaaaaaATTGAAGgggaagaaaacaattaaaacagaggTCTTAGAGCAAATTGAGGATATTaaggcatgttttaatgtgtggatgaaagaagctgataacagagagagaaaacagttgCAGAAACAGATGACACTTCTGAGCATGACTGATActaacaaaaaagagaaaaaagaaaaagagaaaaaagaaaaagatatgaACAATGTCACTGACACATTTTCTCCTCTCTATCCGAGTTTGAAAATCGTGGACCCCCGCCACacggaagaggaagagagcagCCACGGTACCAACGACCCGACAGACGAGAGGCGATCGGGCACGGGAACAGCTCATCTCACTCCTCCGCCGCACTGAAGCAGCTGCGACCGCTGGATTGCCAGTATTCCAAGGCCTCACAGAGGAAACTGATGAGGACGGAGATGAAGCTGATGCATTTCCCATGATTCAAGTCCCTACACAAGGAGGGGGAATAGGCCTGGTGTATAGGGCCTGGACTGAATTAGACATTAGACAAGCGACAAGCCACCTTCCCCCGTGCAAAAACTCTGGTGCACAATTTACCATAGCCCTTCAGGCATTCATTGAGACTTTTCTGCCCAGTGTTCCAGAAATACGACATCTTCTGATGGTAAACCTGGGGCCTATGGAGTATGCAAAGATCCGACACCTTCTCCCCGAAGACCCAACCAATGATCCAGTCATTCTCCATCCAAATCTCGCAAATAGAGCAAATGATGGCTACAATGACCTGCTGGATGATCTCTCCACCGGACTAGAGACCGTGTTTCCAGACAGAATCGACATGACACGTGTGACAAACACCAAGCAGTATAAAGGCGAGACGGTGGAGGACTTCCAGTACCGGCTTTCTGAGACTTTTGATAGACACAGCGGCATCGCTCGCACCACTGCCGCCGGAGCAGTGGTTGAACTTTGGGAagctcatttcaaaaacgtgttTTTGAGTGGGCTGCTCCCTGACATACGAGCTGAAGTGGACAAAACCTGCATTGGACTGCCCGATTCAGCCCTGATGGAGATTGTTAGACATGCTAGACATGCTGAGAAAATCCTGACCAGCACAAGAGACAAGacggagaagaaaagacaacaaaacagtGATGCTGCACAGTTAACCCTCATAAAAACTGTGGCAGCAATGTCTCAAGAAAGAAGGAATGCGGGCAGAGGAAAAGGCAGAGGCAGAGGCAGAGGAAAAGGCAGAGGAAGCAGAGGCAGGGGCCGTGGCAACACACCGATAGTGGACAAAGACACTTGCTACAACTGTGGCGAGAAAGAGCATTGGGCCTACGAATGTCCCCACCCCAAGAAGGACTCGTCTAAGGGACAGCGCAACGACCCTCAGCAGTTTGCAGATTGACAGGCGGTGGGGGATGGAAAGACGGGTGGAATGGACGGACTGGATGACACGAGTGCGCCTGTTAAGGAGgGCTGCTGAGCTCATTGCCCTCACGGAAGCATGGAAGTTGGCTGATGGCTCATCTGTTACCATCTTCACGGACTCAAGAAAACAGGTTTCAGCGGGTCTGCCTAAACCAGCTGAGGGACCACTGCATAAGCTCCGGCCTGGGGACTTTGTTGTGATCAAAAGCTTCAGGAGGAAGAACTGGCAGTCCAGACGGTGGGAAGGACCCTTCCAGATCCTCCTGGTCACTCACACAGCAGTCAAGGTCGCGGAACGATCCACGTGGGTGCACGcaacacactgcaaacaggTTCCGGACCCAGGAGAGGTGCCAGGTTCGCTAACACCTGCAACAAGTGACGAGCAGGTTCCCTGCTGAGTCACCTACGAGGGAAATCGATTCAGAGACCAGCTTGACAGACGGCGTTCTGTGCTATCTCTGAAATCAATCGGGGGAAAACTGGAGTTTTTCTCACTGATTTGCAAACACActgaaggaggagagaaagtgtGACCAACATACTGGTATTGTACCTTTTTGAACACAGCACATTCCTGAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139756 lncRNA upstream 12607 8326242 ~ 8327130 (+) True G103967
TU139755 lncRNA upstream 43628 8295905 ~ 8296109 (+) True G103966
TU139748 lncRNA upstream 158482 8180945 ~ 8181255 (+) True G103959
TU139695 lncRNA upstream 304519 8035011 ~ 8035218 (+) True G103907
TU139690 lncRNA upstream 315301 8024223 ~ 8024436 (+) True G103902
TU139767 lncRNA downstream 15099 8361633 ~ 8362364 (+) True G103977
TU139770 lncRNA downstream 43437 8389971 ~ 8390476 (+) True G103980
XR_005640561.1 lncRNA downstream 68396 8414930 ~ 8417931 (+) True LOC120567375
TU139787 lncRNA downstream 130324 8476858 ~ 8477442 (+) True G103997
TU139808 lncRNA downstream 372032 8718566 ~ 8718800 (+) True G104016
XM_039814314.1 mRNA upstream 201074 8135324 ~ 8138663 (+) True LOC120567357
XM_039814362.1 mRNA upstream 217086 8121570 ~ 8122651 (+) True LOC120567399
XM_039814343.1 mRNA upstream 1783413 6554852 ~ 6556324 (+) True LOC120567386
XM_039814342.1 mRNA upstream 1787130 6547927 ~ 6552607 (+) True LOC120567385
XM_039813595.1 mRNA upstream 2149173 6178291 ~ 6190564 (+) False irf2
XM_039814363.1 mRNA downstream 128082 8474616 ~ 8476449 (+) True LOC120567404
XM_039814335.1 mRNA downstream 161411 8507945 ~ 8519409 (+) True LOC120567367
XM_039814333.1 mRNA downstream 164754 8511288 ~ 8519409 (+) False LOC120567367
XM_039814328.1 mRNA downstream 919328 9265862 ~ 9272872 (+) False tmem129
XM_039814327.1 mRNA downstream 919329 9265863 ~ 9272872 (+) True tmem129
TU139618 other upstream 696554 7621638 ~ 7643183 (+) True G103836
unassigned_transcript_469 other upstream 1128023 7211642 ~ 7211714 (+) True trnam-cau_24
unassigned_transcript_468 other upstream 1129188 7210474 ~ 7210549 (+) True trnam-cau_23
unassigned_transcript_467 other upstream 1131595 7208070 ~ 7208142 (+) True trnam-cau_22
unassigned_transcript_466 other upstream 1133971 7205690 ~ 7205766 (+) True trnam-cau_21
TU139785 other downstream 128370 8474904 ~ 8476446 (+) False LOC120567404
TU140125 other downstream 1571338 9917872 ~ 9918315 (+) True G104301
TU140384 other downstream 3432275 11778809 ~ 11840171 (+) False LOC120567273
TU140383 other downstream 3450593 11797127 ~ 11840171 (+) False LOC120567273
XR_005640590.1 other downstream 6016826 14363360 ~ 14363557 (+) True LOC120567497

Expression Profile