RNA id: unassigned_transcript_437


Basic Information

Item Value
RNA id unassigned_transcript_437
length 73
RNA type tRNA
GC content 0.51
exon number 1
gene id trnaf-gaa_51
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 6582489 ~ 6582561 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gccgaaatagctcagttgggagagcgttagactgaagatctaaaggtccctggttcaaTCCCGGGTTTTGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640368.1 lncRNA upstream 27660 6554161 ~ 6554829 (+) True LOC120566291
TU139519 lncRNA upstream 75322 6506866 ~ 6507167 (+) True G103742
TU139516 lncRNA upstream 99574 6482596 ~ 6482915 (+) True G103739
TU139511 lncRNA upstream 213299 6368865 ~ 6369190 (+) True G103734
TU139376 lncRNA upstream 661949 5917239 ~ 5920540 (+) True G103631
TU139521 lncRNA downstream 72411 6654972 ~ 6655228 (+) True G103744
TU139530 lncRNA downstream 131392 6713953 ~ 6714209 (+) True G103752
TU139531 lncRNA downstream 138689 6721250 ~ 6721597 (+) True G103753
TU139570 lncRNA downstream 532720 7115281 ~ 7115562 (+) True G103788
TU139578 lncRNA downstream 646914 7229475 ~ 7229888 (+) True G103796
XM_039814343.1 mRNA upstream 26165 6554852 ~ 6556324 (+) True LOC120567386
XM_039814342.1 mRNA upstream 29882 6547927 ~ 6552607 (+) True LOC120567385
XM_039813595.1 mRNA upstream 391925 6178291 ~ 6190564 (+) False irf2
XM_039813594.1 mRNA upstream 391926 6177998 ~ 6190563 (+) True irf2
XM_039813663.1 mRNA upstream 413957 6156479 ~ 6168532 (+) True LOC120566943
XM_039814362.1 mRNA downstream 1539009 8121570 ~ 8122651 (+) True LOC120567399
XM_039814314.1 mRNA downstream 1552763 8135324 ~ 8138663 (+) True LOC120567357
XM_039814326.1 mRNA downstream 1757176 8339737 ~ 8346534 (+) False LOC120567362
XM_039814325.1 mRNA downstream 1761211 8343772 ~ 8346534 (+) False LOC120567362
XM_039814363.1 mRNA downstream 1892055 8474616 ~ 8476449 (+) True LOC120567404
unassigned_transcript_436 other upstream 2458 6579959 ~ 6580031 (+) True trnaf-gaa_50
unassigned_transcript_435 other upstream 4064 6578353 ~ 6578425 (+) True trnaf-gaa_49
unassigned_transcript_434 other upstream 8965 6573452 ~ 6573524 (+) True trnaf-gaa_48
unassigned_transcript_433 other upstream 9484 6572933 ~ 6573005 (+) True trnaf-gaa_47
unassigned_transcript_432 other upstream 10703 6571710 ~ 6571786 (+) True trnaf-aaa
unassigned_transcript_438 other downstream 1740 6584301 ~ 6584373 (+) True trnaf-gaa_52
unassigned_transcript_439 other downstream 4270 6586831 ~ 6586904 (+) True trnaf-gaa_53
unassigned_transcript_440 other downstream 8013 6590574 ~ 6590646 (+) True trnaf-gaa_54
unassigned_transcript_441 other downstream 10836 6593397 ~ 6593469 (+) True trnaf-gaa_55
unassigned_transcript_442 other downstream 11359 6593920 ~ 6593992 (+) True trnaf-gaa_56