RNA id: unassigned_transcript_465


Basic Information

Item Value
RNA id unassigned_transcript_465
length 73
RNA type tRNA
GC content 0.59
exon number 1
gene id trnam-cau_20
representative True

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 7202110 ~ 7202182 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCCTCGTTGGCGCAGTAGGCAGCGCGTCAGTCTCATAATCTGAAGGTCGTGAGTTCAAGCCTCACACGGGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU139570 lncRNA upstream 86548 7115281 ~ 7115562 (+) True G103788
TU139531 lncRNA upstream 480513 6721250 ~ 6721597 (+) True G103753
TU139530 lncRNA upstream 487901 6713953 ~ 6714209 (+) True G103752
TU139521 lncRNA upstream 546882 6654972 ~ 6655228 (+) True G103744
XR_005640368.1 lncRNA upstream 647281 6554161 ~ 6554829 (+) True LOC120566291
TU139578 lncRNA downstream 27293 7229475 ~ 7229888 (+) True G103796
XR_005640521.1 lncRNA downstream 107701 7309883 ~ 7313131 (+) True LOC120567111
TU139604 lncRNA downstream 296531 7498713 ~ 7499043 (+) True G103822
XR_005640525.1 lncRNA downstream 319139 7521321 ~ 7528352 (+) True LOC120567132
TU139607 lncRNA downstream 341394 7543576 ~ 7543818 (+) True G103825
XM_039814343.1 mRNA upstream 645786 6554852 ~ 6556324 (+) True LOC120567386
XM_039814342.1 mRNA upstream 649503 6547927 ~ 6552607 (+) True LOC120567385
XM_039813595.1 mRNA upstream 1011546 6178291 ~ 6190564 (+) False irf2
XM_039813594.1 mRNA upstream 1011547 6177998 ~ 6190563 (+) True irf2
XM_039813663.1 mRNA upstream 1033578 6156479 ~ 6168532 (+) True LOC120566943
XM_039814362.1 mRNA downstream 919388 8121570 ~ 8122651 (+) True LOC120567399
XM_039814314.1 mRNA downstream 933142 8135324 ~ 8138663 (+) True LOC120567357
XM_039814326.1 mRNA downstream 1137555 8339737 ~ 8346534 (+) False LOC120567362
XM_039814325.1 mRNA downstream 1141590 8343772 ~ 8346534 (+) False LOC120567362
XM_039814363.1 mRNA downstream 1272434 8474616 ~ 8476449 (+) True LOC120567404
unassigned_transcript_464 other upstream 1205 7200833 ~ 7200905 (+) True trnam-cau_19
unassigned_transcript_463 other upstream 2482 7199556 ~ 7199628 (+) True trnam-cau_18
unassigned_transcript_454 other upstream 345856 6856182 ~ 6856254 (+) True trnam-cau_9
unassigned_transcript_453 other upstream 583860 6618178 ~ 6618250 (+) True trnaf-gaa_65
unassigned_transcript_452 other upstream 585461 6616577 ~ 6616649 (+) True trnaf-gaa_64
unassigned_transcript_466 other downstream 3508 7205690 ~ 7205766 (+) True trnam-cau_21
unassigned_transcript_467 other downstream 5888 7208070 ~ 7208142 (+) True trnam-cau_22
unassigned_transcript_468 other downstream 8292 7210474 ~ 7210549 (+) True trnam-cau_23
unassigned_transcript_469 other downstream 9460 7211642 ~ 7211714 (+) True trnam-cau_24
TU139618 other downstream 419456 7621638 ~ 7643183 (+) True G103836