RNA id: XM_039818963.1


Basic Information

Item Value
RNA id XM_039818963.1
length 4615
RNA type mRNA
GC content 0.49
exon number 37
gene id col28a2a
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 16988071 ~ 17023560 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AATATGAGAAGCTGAAAAAGGATTTTGAAGCCTTCAAAGAACACAGCACCAACCTCCTTTTACAAGAAAGGGAGTTAAATAAGAAACTTCGCCACATGATGGGCTAAACTTTAGCAATAATATCTGGGACAAAGATGTTCCCCTCCTCTACGTTGGTGCTGCTGGTAACAGCACTGACCAGCGTCTGGGCCCAAGAGTTTTACGAAGAGAGGAAAACTAACATAAAATCCAGGTCCAAACCTTTGGCTGCAAATATTCATAATGGACAAGCCATCCTAGACGAGGACTGTAGCTTGGAGCTCTCCTTCCTGTTGGACAGCTCCGAGAGCGCCAAGGACAATCATGAGCAGGAAAAGCAGTTTATCATGAACATGGTGGACAGACTCCAAGAGGTACGGCTGCAGACCGGCCGCAGCTTAAGCTTGAGGGTGGCTCTCCTGCAGTACAGCAGTCACGTTATCACAGAGCAAACCTTCAGAGACTGGAGGGGCACAGAGAACTTCAAGACCCGTATAGCTCCCATCATCTACATCGGGCATGGCACCTACACCACCTACGCCATCACCAACATGACCAAAATCTACCTGGAGGAATCCAGCCCCGGCAGCATCAAAGTAGCCATGCTGTTTACAGATGGTATTTCCCACCCGAGGAACCCTGACATTTTCTCTGCTGTCGCTGATGCGAAGAACCAGGGCATCAAATTCTTCACTTTGGGCATCACCCGGGCAGCCAACGAGCCAGCCAATGTAGCCCATCTCCGTCTGCTCGCCAGCTCCCCGGCCACCCGCTTCCTGCATAATTTACAGGACAAAGATATTGTTGAAAAAATCGTCCCTGAGATTACCAACTTGGCTGATGAAGGTGCCCCTCTGGCTCAGAGATGTGCTtgtgagaaaggagagagggacCAAGCGGGCACGCGCGGGAAAAAAGGTCGCTCCGGAGATGATGGAGCCCCAGGGCTTAGAGGTCAAAAGGGTGAAGCAGGACTAAGTGGTCTACCCGGGCGAGAGGGTGCGGAGGGAAAACCAGGTTATAAAGGAGAGCAGGGTGAGAGGGGTGAGTGCGGCACTCCAGGAATCAAAGGAGACAGGGGTCCTGAGGGTTCAGTTGGAGCAAGAGGACTTAGAGGTTTACAGGGGTTACCGGGACCACATGGAGACATTGGACCAGAGGGCCATCAGGGAAAGCAGGGTGAACGTGGCCCACCTGGCCCCTCAGGGATTCAGGGGGAGACTGGTATTGGACTTCCTGGACCAAAAGGTGACATGGGATTCCAGGGTCGACCAGGTCCTCCTGGTCCCCATGGAGTGGGCGAGCCCGGCCTTCCTGGACCTCAAGGACCACAGGGTGTTCAAGGGGAAAAAGGACCCCATGGCGAGGGGTTTCCCGGACCAAAGGGGGAACGGGGGCTCGCTGGACCGAGAGGACCAAGGGGACAGCAGGGCGCAGGAATCAAAGGAGAAAGGGGTGACATGGGGCCTCCAGGTTCTCCTGGGCCAACTGGACTGACAGGAGTGGGCATACAGGGAGAGAAGGGAATCGAGGGTCCAAGAGGTCCACCAGGCGTCAGAGGACATCCAGGAGAAGGTTTACCTGGACCGAAGGGAGACCAAGGTTTACCAGGAGAGCAGGGAGCAACAGGCGAGAGAGGCATTGGTGAGCCTGGTCCAAAGGGAGACCCTGGGGCAGCTGGTTTGGGTGGCCTGCCTGGTCTTCCAGGAGAGGATGGAGCTCCAGGGCAGAAGGGGGAGGCTGGTTTACCTGGTTTAAGAGGTCCTGAGGGAGCACAAGGAGTCGGCACTCAAGGGGAGAAGGGTGACCAGGGTCTGAGGGGCATACGTGGGTTACATGGGCCTACTGGGATCTCAGGACCATCTGGACCAAAGGGTGAACGTGGGATACCAGGCCAGCAGGGCATGCCGGGGCAGCCAGGACGGTCCATATCAGGTCCAAAGGGTGATGGAGGCCCTGCTGGTCCCCCTGGTCCTTTTGGGGAAACAGGCCATGGATTACCTGGTCCAAAGGGTGATCGTGGTCATCCGGGTTCATCAGGTCCAGTTGGTCCAAAAGGCGAAGGCATCCGCGGCCCTGTGggtCCTCCAGGCCTGCCAGGCTTACCGGGCGAGCAGGGCCCAGAAGGAATAGGAATTCCTGGTCCCAAGGGTGATATTGGTTTCAGAGGATTGCCAGGTTTGCCCGGCCCCCCTGGAGAGGGCTTACAAGGACCACCTggtAATGTTGGGAAGCCAGGAAGTGCTGGTCCAACTGGACCTTCAGGAGTGGGTATTCAAGGCCCAAAGgGTGAGCCAGGATCACAAGGTATGACTGGGCCTAGAGGGCCTCAAGGGGATGGATTTCCTGGAGCTAAGGGTGATCGTGGCTCACAGGGTGAGAGGGGGATGAAAGGTATAAAAGGAGACATGGGAGACCCTGGAGATCATGGTGAAGCAGGGAGGCCAGGATCAAAAGGAGACCCAGGCCTCACAAGAGAAGACATTATTAAGCTGATCAAAGAAATCTGTGGATGTGGCATCAAGTGCAAAGAAAGACCAATGGAACTTGTGTTCGTCATCGACAGCTCAGAGAGTGTTGGCCCCGAGAACTTTGAAATCATCAAGGACTTTGTCACCAGGTTGGTGGACCGGACCACAGTTGGACGCAACGCCACCAGAATGGGACTGGTCCTCTACAGTCTGGATGTCCATTTGGAGTTTAACTTGGTTCGCCACATGAACAAACAAGACATTAAGCAGGCAATCAGAAAAATGCCTTACATGGGTGAGGGCACCTACACTGGCACCGCCATCAGAAAGGCAACTCAGGAGGCTTTCTTTAGCGCTAGGCCTGGAGTCAGGAAAGTAGCCATCGTCATCACCGATGGTCAAACTGACAAACGAGAGCCTGTCAAACTTGACATAGCTGTGAGGGAAGCTCACGCTGCAAACATTGAGATGTACGCCCTGGGGATCGTCAATTCTTCTGATCCTACGCAGACTGAGTTCCTGCGAGAACTCAACCTCATTGCCTCGGACCCCGACAACGAACACATGTACCTTATTGATGACTTCAACACTCTACCAGCACTGGAGTCTCAACTCATTAGCCAGTTCTGTGAAGATGAAAATGGTGCCCTCATTTACAATCGAATTACAAACGGACTCTGGAACGGCAACAATGGCAATGGTATAAATGGAAATAATGGACATGGGCGTGGTATTAATGGAAACAATGGACATGGAGAGAGTACCAATGGATATAATGGCTATGGCAATAATGGTTATGGAAACAATGGATATGGGAACACCGAAAATGTTCACAATTACCAAGAGGAAATTCAAATTCAGAGGCGCACCAACAGCCGAGGCCGTGGAGACACTTTCGCGCTACCCATCAGCGCTGATCCGCTCCCCGTACAGGTGGCGGAAGACGATGAAGGTGAAGATTTAGACTTAAGAGCCCACGCGCGGGGCGGTAATACTGTAGCTACTGTAGCTGTGGTTAACAAAACAACATCTTTATCACCTGTGAGAGAAAGCTCTGTCTCTAATGAGGCCATCTTATCTTCTTCTACGTCGTTATCCTCATCTGCAACATCTGTGTCAACACTGGGCTCAGCTTTAAACTCTAACCGGTTGCCGGCTGTGGTGAGTCCAGTCCTGACTGAAGAAGCCCCTGTTGATCCCCGCTGTAACCTCAGCTTGGACCAAGGCACCTGCCGAGACTATAGCATTTACTGGTACTACGACAAGCAGGCCAATGCCTGTGCACAGTTTTGGTATGGAGGCTGCGGTGGAAATGACAACCGTTACAACACAGAGGATGAATGCAAGAATACTTGCGTTCTATTCCGAACAGCAGGATGAAAGGAGAAGAAGACATCAGAAAGTGGACTActcatttgttattttaatgtgATGCCTTCTGTCAGTTGGGTTCAGCAAATAATTTCATGCAACACTTTTGTCCTCACATAAATAAAAGTACTGAAAAATTATGAATTTAATCAAATTCTGAAAAATTACATGTTGCTGTTCACATCTGACGTAATTAAGATGAATTTCTCCAAAACCGACTTTATTACCTGAAAGAAATTGTATTGTGCTTGATAAACAAGAAGTTATCCTTTTATTCAAGGTTTGGCTGCCCTCGGTTTCATAAAACAACTTTAATTAGAAATTGTATTAGAATTTAAAATTAACCTGTAGATCATTCTTATACCTCTATGAGCCACGTGCTTTACGTATTTTGTGTTGATATTATTTACTGAAATAAGATGAGTACTTTTGTATGTGttctatttgtttttattacaatTTGTCCGTTCGGGTTATAACTGGCAGCTGTGATTAGAGGGCCATTTTTGTCTGGGTACTACTTTCATTGGTCTACTGCGATTGTCTAAACCTGGCTATTTGGGCAGTGTGTGTAAcgtatatttaaaataaatgttttttgttttttttttgtaatgaaatgtaaaataatagTGGTTTGTctgattttgtgtgttttcattgaGGACAATAACCAGTATCACTATTCCCATTATAACTGTCATCAATTAATTAAATGAATGGATTATGAACATTACCTATATCTAACTTTaaaa

Function

GO: NA

KEGG:

id description
K23619 COL28A; collagen type XXVIII alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167450 lncRNA upstream 30157 16956725 ~ 16957914 (+) True G124524
TU167326 lncRNA upstream 284142 16703371 ~ 16703929 (+) True G124430
TU167325 lncRNA upstream 284255 16703371 ~ 16703816 (+) False G124430
TU167327 lncRNA upstream 284327 16703371 ~ 16703744 (+) False G124430
TU167290 lncRNA upstream 355730 16598643 ~ 16632341 (+) True G124407
TU167600 lncRNA downstream 233282 17256842 ~ 17257502 (+) True G124627
TU167604 lncRNA downstream 238177 17261737 ~ 17262826 (+) True G124631
TU167648 lncRNA downstream 413801 17437361 ~ 17437819 (+) True G124661
TU167662 lncRNA downstream 446188 17469748 ~ 17498759 (+) True G124671
XR_005640894.1 lncRNA downstream 581585 17605145 ~ 17614067 (+) True LOC120569550
XM_039818668.1 mRNA upstream 49976 16930122 ~ 16938095 (+) True rdh1
XM_039818669.1 mRNA upstream 49976 16930122 ~ 16938095 (+) False rdh1
XM_039818672.1 mRNA upstream 58686 16919996 ~ 16929385 (+) True LOC120570363
XM_039818670.1 mRNA upstream 68238 16910073 ~ 16919833 (+) True LOC120570362
XM_039818671.1 mRNA upstream 68238 16910862 ~ 16919833 (+) False LOC120570362
XM_039817089.1 mRNA downstream 2805 17026365 ~ 17030715 (+) True bbs5
XM_039817650.1 mRNA downstream 7600 17031160 ~ 17035529 (+) True klhl41a
XM_039817652.1 mRNA downstream 18322 17041882 ~ 17049327 (+) True ppig
XM_039817657.1 mRNA downstream 34245 17057805 ~ 17065455 (+) True phgdh
XM_039817075.1 mRNA downstream 42685 17066245 ~ 17070476 (+) True klhl23
TU167128 other upstream 886460 16099271 ~ 16101611 (+) False dap1b
XR_005640926.1 other upstream 1832185 15138477 ~ 15155886 (+) False trpm2
TU166397 other upstream 2754001 14233332 ~ 14234070 (+) True G123742
TU166312 other upstream 3310725 13635586 ~ 13677346 (+) False cps1
TU166270 other upstream 3633986 13353306 ~ 13354085 (+) True G123633
XR_005641003.1 other downstream 104321 17127881 ~ 17177640 (+) False myo3b
XR_005640989.1 other downstream 836600 17860160 ~ 17880726 (+) False hoxd10a
XR_005640990.1 other downstream 837193 17860753 ~ 17880726 (+) False hoxd10a
XR_005640988.1 other downstream 837312 17860872 ~ 17880726 (+) False hoxd10a
XR_005640963.1 other downstream 987197 18010757 ~ 18017413 (+) False hnrnpa3

Expression Profile