RNA id: XM_039817652.1


Basic Information

Item Value
RNA id XM_039817652.1
length 2588
RNA type mRNA
GC content 0.46
exon number 13
gene id ppig
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 17041882 ~ 17049327 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACGTGCCGGCTGCGTTGACTGGCGCACGCTTCTTGAAATACTGACGTCCCTGCCGCGCCATCTTTAGAAAACAGTGAGCCCAACACTGAATGAAACTTGATTTCCGTCGTTTTTGGGAGCTGCTCGCCATATGGAGTGATAGCCTTGTTTTTCCAGGTGTTTGATCAGTAAAGGAGATCATGGGGATCAAGGTTCAGCGCACTCGGTGCTTCCTTGACATTGGCATCAGTAATGTGCTCGTCGGCAGAGTTGTGGTTGAATTGTTCTCAGACATCTGTCCCAAAACTTGTGAAAACTTCAGGTGCCTCTGCACAGGTGAAAAAGGCATTGGTAAAGGCACTATGAAACCCCTGCACTACAAAGGATGTCTGTTCCATCGAGTTGTAAAAGACTTCATGATTCAAGGAGGAGACTTCAGCGAAGGTAATGGACGAGGAGGCGAATCCATCTATGGAGGCTTTTTTGAAGATGAAAGCTTTGCTGTTAAACACAACAAGGAGTACCTGTTGTCTATGGCCAATAGGGGCAAAGATACAAATGGATCACAGTTTTTTATAACAACAAAACCCTCACCACATCTGGATGGtgtccATGTGGTTTTCGGTCATGTGATTTCTGGCCAAGAGGTTGTTCAAACCATGGAGAACCAGAAAACGGATCCTAATAGCAGACCGTATGCTGACGTGAAAGTTTTGAACTGCGGAGAGCTTGTCCCTAAATCTAAAGCaaagaaagatgaaaaaaagaaagagcgaGCCTCTTCTAGTTCCAGCAGTAGCTCCAGCAACTCTGAGAGCTCATCACAGTCCTCCTCTGATTCTGAAGAATCTGAGAAGGAAtctaagaagaagaagaaaaagaaggcgaaaaagctaaaaaagaaagagaagaaggaaaagaaaagATCAGAGGCTGAAAGTGCTGAAGAGAAAGAACAAGAAGAGGTGGTTACATCTACTGTACGTCCTGAAGAAATTCCACCCATCCCAGAGAACCGGTTCCTCATGAGGAGGAGTCCCCAGGTGGCCCAGAAGCCAAAAGAAGAGGCTGAAAAGGTTCAGCCAAAAAAGGAGGAAAGGCCAAGAGAAAGTGCTGGCATAACATATAATTCTCAATCATCATATCACAGAAGACTGGTGATGACACGGTCCGGGAGGAAGATAAAAGGCAGGGGTCCGAGGCGCTATCGGACTCCGTCACGCTCTCGTTCTAGGTCCAGAGATCGTTTTCGGCGCAGTGAAACCCCTCCACACTGGCGTCAGGAGATGCAACGTCAGAGGATGAGGGCAGTCACTGGAGAGCGCTGGATTAAGGGTGACAAAGGGGACATGAACGAGGCCAAGGATGAGGCTGCTAAAGCTCCAAGAAGAGAAAGATGGACCGCTGACACAAAGCGCGAACACACAGCTGAGGgtaaaaaagacaagaaaactCGGTCACATAGATCCAAAAGCAAAGAAGAGGACAATGATGACAAGAATGAGAATCATAGCAAACACAAGGCAAAGAAACGGGATAAATCCCAAAGCCGCAGTAAAAGCAGGGAAAAGAGTAGGAGGTCTAAAAGCAGAGAGAAGGGTCATAAGCACAAAAGTGATGACAGAAGAGGTCGCTCAAGGAGCAAAGACCAAAATGTGAATAAGAAGGAAAAGGAGTCGGAGTCTGATCacaataaagatagaaataaggGTCATGAGTCGGATAAAAAGCATAAAGAGGATACCAAAGGAAGAAATGGTGAGAGAACTAGAACGAAGTCACAAAGTAAGGAAAGGCCAACAACAAAAGATGGGCACAGATCAAGCAGCAGGAACAGGGATAAGAGCGGGCGTGCAGCGTCAaaagacaaagaagaaaaacgagaaaaggacagagagaggggcaaAGAACGTATTAGGAGTCAGGACAGACGACACAACAGTGAAAGGGAGAATAAGAAGCGAGGGACATCCAGGGATAAGGAACAGCGAACAAGAAGTCCAGAAAGAAATAAGCCGAGAGACTCCCACAGAGGCAGGCGCTCCAGAAGCAAGAGCAATAAGAGAGACCACAGCAAAGATCGGTCGTCTCATAGAAAGGACAAAGACAGAGAATCTGGCAACCAAAGGAGAAGACGTAGCAGCAGTTCTGAGAGCGATAGAGATGAGAAAAGGAAGAGTCAAAAGAGCCCAGATGGCAAACGGAGAAAAGCAAATAGTAGCTCCAGATCCAAAGACCGAAGAAGCCCGGCCAAACCAAGACCAGATAGTACAAAGGGCAAAGACCGAAACGACAGCAAGAGGAATAAATCGAGCTCAAGCTCTCACAGCGACTGAGACAGTGATGAAATCCTAAAGGAATAGATTGGGAGTTTTAAAGTCTGTCCCTATTTTTTTACCCACTACACATATAGTATGCAGCATCATCTTTCCATCTTCAAAATCCTCATTCAGTGCATACAAACCCATTCCACAGTTGAGCCAAAGCTAACAGGGTTATACAGAAGTCCGTCAAAGCTCATTTCCAAACTGTGAATACCACTCCTCAAACCTGCAGTGGCAGACTGTAGCATCATGTAAGCTTTGGCTGAACTATGGTCTTCATTTTGT

Function

GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process
GO:0006457 protein folding biological_process
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function

KEGG:

id description
K09566 PPIG; peptidyl-prolyl isomerase G (cyclophilin G)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641083.1 lncRNA upstream 29970 17010145 ~ 17011912 (+) True LOC120570569
XR_005641084.1 lncRNA upstream 33374 17006585 ~ 17008508 (+) True LOC120570570
TU167450 lncRNA upstream 83968 16956725 ~ 16957914 (+) True G124524
TU167326 lncRNA upstream 337953 16703371 ~ 16703929 (+) True G124430
TU167600 lncRNA downstream 207515 17256842 ~ 17257502 (+) True G124627
TU167604 lncRNA downstream 212410 17261737 ~ 17262826 (+) True G124631
TU167648 lncRNA downstream 388034 17437361 ~ 17437819 (+) True G124661
TU167662 lncRNA downstream 420421 17469748 ~ 17498759 (+) True G124671
XR_005640894.1 lncRNA downstream 555818 17605145 ~ 17614067 (+) True LOC120569550
XM_039817650.1 mRNA upstream 6353 17031160 ~ 17035529 (+) True klhl41a
XM_039817089.1 mRNA upstream 11167 17026365 ~ 17030715 (+) True bbs5
XM_039818963.1 mRNA upstream 18322 16988071 ~ 17023560 (+) True col28a2a
XM_039818668.1 mRNA upstream 103787 16930122 ~ 16938095 (+) True rdh1
XM_039818669.1 mRNA upstream 103787 16930122 ~ 16938095 (+) False rdh1
XM_039817657.1 mRNA downstream 8478 17057805 ~ 17065455 (+) True phgdh
XM_039817075.1 mRNA downstream 16918 17066245 ~ 17070476 (+) True klhl23
XM_039818479.1 mRNA downstream 21686 17071013 ~ 17076316 (+) True ssb
XM_039817841.1 mRNA downstream 30701 17080028 ~ 17126906 (+) True ubr3
XM_039817842.1 mRNA downstream 30701 17080028 ~ 17126906 (+) False ubr3
TU167490 other upstream 42350 16997781 ~ 16999532 (+) False col28a2a
TU167128 other upstream 940271 16099271 ~ 16101611 (+) False dap1b
XR_005640926.1 other upstream 1885996 15138477 ~ 15155886 (+) False trpm2
TU166397 other upstream 2807812 14233332 ~ 14234070 (+) True G123742
TU166312 other upstream 3364536 13635586 ~ 13677346 (+) False cps1
XR_005641003.1 other downstream 78554 17127881 ~ 17177640 (+) False myo3b
XR_005640989.1 other downstream 810833 17860160 ~ 17880726 (+) False hoxd10a
XR_005640990.1 other downstream 811426 17860753 ~ 17880726 (+) False hoxd10a
XR_005640988.1 other downstream 811545 17860872 ~ 17880726 (+) False hoxd10a
XR_005640963.1 other downstream 961430 18010757 ~ 18017413 (+) False hnrnpa3

Expression Profile