RNA id: TU167982


Basic Information

Item Value
RNA id TU167982
length 202
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id G124915
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 18188840 ~ 18189132 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGGGCCATCACTGCAGTGCGCCCCATTGGCGAGGGAACATTTCTTGCAGCATTCCTTGTAGCACTGCTCTCGCTCCGCAGTCGCACTCCTCTCCCACTTCCACAAATCCATTACCGCATTCTGTTGCCTCGAACAGCTAACAGAAGCAGACAGGAGAGTGTAAAGGATGGAGCATATGTGTGATTCATGACAGTTGGGGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167981 lncRNA upstream 322 18187418 ~ 18188518 (+) True G124914
TU167968 lncRNA upstream 6604 18129251 ~ 18182236 (+) True G124901
TU167958 lncRNA upstream 99297 18089225 ~ 18089543 (+) True G124895
TU167891 lncRNA upstream 307335 17860753 ~ 17881505 (+) False G124841
TU167890 lncRNA upstream 318718 17860753 ~ 17870122 (+) True G124841
TU167992 lncRNA downstream 44910 18234042 ~ 18297620 (+) True G124924
XR_005640983.1 lncRNA downstream 102278 18291410 ~ 18292443 (+) True LOC120569814
TU168047 lncRNA downstream 253156 18442288 ~ 18454627 (+) True G124966
TU168058 lncRNA downstream 276454 18465586 ~ 18465820 (+) True G124976
TU168263 lncRNA downstream 626407 18815539 ~ 18816057 (+) True G125098
XM_039817762.1 mRNA upstream 34941 18118525 ~ 18153899 (+) True osbpl6
XM_039817971.1 mRNA downstream 22820 18211952 ~ 18213810 (+) True gpr1
XM_039817972.1 mRNA downstream 22821 18211953 ~ 18213811 (+) False gpr1
XM_039817968.1 mRNA downstream 25839 18214971 ~ 18223611 (+) True LOC120569837
XM_039817969.1 mRNA downstream 27620 18216752 ~ 18223611 (+) False LOC120569837
XM_039817961.1 mRNA downstream 35116 18224248 ~ 18233735 (+) True LOC120569834
XR_005640963.1 other upstream 171427 18010757 ~ 18017413 (+) False hnrnpa3
XR_005640989.1 other upstream 308114 17860160 ~ 17880726 (+) False hoxd10a
XR_005640990.1 other upstream 308114 17860753 ~ 17880726 (+) False hoxd10a
XR_005640988.1 other upstream 308114 17860872 ~ 17880726 (+) False hoxd10a
XR_005641003.1 other upstream 1011200 17127881 ~ 17177640 (+) False myo3b
TU168229 other downstream 513896 18703028 ~ 18704528 (+) True G125079
XR_005640959.1 other downstream 1985696 20174828 ~ 20265238 (+) False myo16
XR_005640960.1 other downstream 1985696 20174828 ~ 20265148 (+) False myo16
TU168970 other downstream 2303046 20492178 ~ 20521274 (+) False G125627
TU169140 other downstream 2663957 20853089 ~ 20858910 (+) True mpc2b

Expression Profile