RNA id: TU168047


Basic Information

Item Value
RNA id TU168047
length 3687
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G124966
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 18442288 ~ 18454627 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TATCCACATGAAATGTTTAATTatgcacaaataaaataatgttcaCAAGTAAGTTTAAAAAGAAAGGAGGAACAGTTTATATTCAGGCCAGGATGGAATCAAATGGCATTCGAATATTTCGATCGGTGATTTAATTTAACAACCAATTTAGCCAGTCCTATCAGAATGGTGTTTGGGTTTATTTTACAAACGGTCATTTTGGCTTCAAACTCAAAACTCATGTAGCAATAATTTCAACGAAAAAAATTCAGTGaaatgctttttatttattagacAAAATGAAATTCTTAGTTACTGAACAAATACAAACTTAGGAATAGATTAAAGATAAGGCAAAGTTTACAAAAAGCATGTCCTCTCAGTCTGACGGTTGAGAAAGTGCTTTAGTCAGTCAGACCAAACATTCTTACTGTCCACATCTTTTTGACTGGGTGACCCAAATCTCAAACAACCTCCATGTGGGGGTGTATCCATGACATTCAAGCTTTTTGCCAAAAGGTGTAAAACATACATTTGGCTATATGCCTTTTTATTTGCAGGTAAAATAAATAAGGGAACACATGTCATATATCTAATAACAACCTAAACTTGAAAAGCAAACAtattatgaaaagaaaatgaaggtTCAAACAGCCGCTGAAGCATCAACTGCTGACCCCCTGACTGCAGATTATCTGAGAGTGGATTATGTTTGCTGCAAGATGTTAACATGCAGTGAAAaccatataaaacacaaaattcacatttcaaaatatattCTCATGCACTGGATCACTTACAGTGTTTCACCATGGCATAATAAAGTCAAATATATGACAGTACAATCTAATGTGTTATTGTGAGGAGGAAAAACCAAAGCATCCCCtacaaaaatacagtttttaatCACTGCAACTTCAGATTGCCTCAGCAACACATCCAAACAattaaatgacaaactattattacactattATGAAAGTTACTTTTCATAAAATGTGGCCTGTACAATGAACTTTTGTACATTAAAAGCAATTCTATTGCCTTGCTCATACAAAGGTTTGTTGTCCCTCACAGGTGACAAGGCAGTGACAGGGATGAAATGTTTTAAGCTTTGTTTTTGCTCCAACATTTAAACCCTTGACACAAGACGGCTTATCATAGGCTAATACAACAGATCAAGGCCCTTTGAGGAACCTCCAGCAGAGCTAAAGTCAGTTTAATAAATTACATTCATCATAAAATAGAagagaatacattttaaaagccTTCTTTTCTAATGTTAAACTAGTAAAATATGCAGTAGTATACTCTAAGTATACTCCTTATATTCCAACCAATAATGTGTCAaacttttcataaaaaatgaagaaaaaataaaaataaaaagtgaacaAATGAAATATCTCTTGGTGGATTGTCAGAGTTAATCACACAAAAttgtacacacacattttcataaaaaaacaaaaacttataTCAGTCATTTGAAAAGacatcagaaacattaaaaggaAAGGTTGATATTTGCACAAGCTGCTTACAAAACAGGGAACTAAAAACTTACATGAAAAGTATTCAAGAGAATGTTAGGTATATGAGTGAAAACGGTTTTGTTTTTCACTTAACCAGACACAATACCCACTCTGTCTGCTGTCAGTTTCAAACAAAGACGGGTAATTGCATAATGTGGTATCAAGCATACACAACTAAACTTCACCAAACATCTACCTCCTTAAAAGTATTGTACTGTGCATGAAACTAATTTGGAAACAATTGCCATACATTAATCATCTTAAAATTGAAACAAATGAATTTAAGTTTGATATCAACTCTTATAAGtagtacacacatacaaatttCCTCTGTGAAAATGAATTGAAAGACTTAATGCACTGACGTAGCATTGCAAAACATTTCTCTCTAAATGTGACTTAAGCAAAGTAGATTTAATCAAGTGATTTTTCACACAAAGCCTTTTAAATATGCAGGGATATCCTCATCTGCACAATTCTTCAGGCACTTGTAACATTCAAATAATACAGTACTGACAACAGACTGTAACATTAAGACTGACAGTTCACACACTACTCAATTTATCCCTGATGGGATTACAGGGACTTTAGTTTGAATTTGAGTGGTAGTAATTCTAACACCCTTTACTGATTCAATGGCTGTGGAGGCTCTTGTTAAAAACATGGTTTGCTAAATGTTCATGTTGAACCAGGAGCTGGTTTCACAAAGATATTTTAGACTGGTCTGTAATGTAAGGCCCGTTCGGATTTTGCACTTCGATTTCTTTGATGCAAGTTAGATAGTCTCACAGAAATAAAGATAGAGTTATGTTAAGACACCTGTTGACCAgtgtttccatggtaacagtgAGTGACACCTGCTGACCAGTGTCACCAATCTACAAAAAGGAGGAAAACATGACTCATAATTTGTCGGTTTCTAACAATATGGCGGAGCGAGAAATGAGAGGGAAATCTTCCCAGTACAATGTCCTTCTAACTTTTGGATCAAAACATGTTCTGCTGAGCGGACTGCGGTGGTTATGTGGTCAGCCATCAGTCCTACTTAAGATACTTAAGAACTAGACATCTCTGTGCAGCATATTAATTCAGACATCTGAAAACTGACTGATTGGTTTGACCTAAGCCATAGTCAAAGTATATCTTTGTGAAACTGGCTCCAGTGAAAACCACTTCCAGATACATCAGCAAATCGACCATCACTGTGACCGATAACCCAAATATttgggatttcttttttaatttataatacagAGGGTAAAACCTAAATGTTTGAATCATTGTTGCTTCACTGCCTTAAATAAAAAGTATCTGCAGCAAACATTCTGTATATGCAATGCAAAGGCACACCAGGAGGTGGAGCACTGATCCTGTTCTCTGGGGATGACAGGTTATACAATATAGATGGTCTACCCTCAGAACATTTAAAGGAAACTTTCGTAATTTTTACAATGTAAAATTCAAAGTTCAAAGTTAAAATAAGTGTGTTTTACTAGTTTGTTTGAAATAATTAAAGCTGGCACTAGATAAAACAATCAATGtgaaaatcatttcagtttacATAACACATTCAAGAAaggaaaaataatttgttgcTCAATATGTTGAGGATACAATTTAAACAATATAGGACCCCTTTACACCTGGTCTTAACATGTATTGTTTTCAGATTAGATCTATCATGCTCATCCCTTCCTCTTGTACTATTTACATCATTTTAAATGGTCAGTGAACAACATTTCAGCGTGTTTCAATATCAGTTAATATTAGGTGTTACTACTGTACCTGCACTGCCTGTTTTTCCTGTGTGCTTCCTGGTTGGATTTGTTCAGAAAACTTAATTCTTTTCCTTTTGAGCCTCCTATATGTGAACTGGAGACGCACTGCATTTCAGCTGATTAAGAGGCTAAATGCACCTCTGACCTTTGTCAGAATTGGATTAGGAAATAGAAACCAGGATATTATGCACACTACTGAGGATGCATGTTAATGCAGGTGCAAAGGTGCGTGCATAAAATAATCTTCTGTGACACTTATCTAACACAGTATAATCCTAGTAACTGAGCTATGTAATTTATTATGAGAGATCAGAGTAACGTCTACAACCTTTTCTTCAGTGATGTTATCAGCATGGAGATTGTTGTAGATAGTGTGTGGTACAATTATGAATAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167992 lncRNA upstream 144668 18234042 ~ 18297620 (+) True G124924
XR_005640983.1 lncRNA upstream 149845 18291410 ~ 18292443 (+) True LOC120569814
TU167982 lncRNA upstream 253156 18188840 ~ 18189132 (+) True G124915
TU167981 lncRNA upstream 253770 18187418 ~ 18188518 (+) True G124914
TU167968 lncRNA upstream 260052 18129251 ~ 18182236 (+) True G124901
TU168058 lncRNA downstream 10959 18465586 ~ 18465820 (+) True G124976
TU168263 lncRNA downstream 360912 18815539 ~ 18816057 (+) True G125098
TU168268 lncRNA downstream 372128 18826755 ~ 18827121 (+) False LOC120570507
TU168266 lncRNA downstream 373233 18827860 ~ 18828360 (+) True G125101
TU168269 lncRNA downstream 374059 18828686 ~ 18828913 (+) True G125104
XM_039817961.1 mRNA upstream 208553 18224248 ~ 18233735 (+) True LOC120569834
XM_039817968.1 mRNA upstream 218677 18214971 ~ 18223611 (+) True LOC120569837
XM_039817969.1 mRNA upstream 218677 18216752 ~ 18223611 (+) False LOC120569837
XM_039817972.1 mRNA upstream 228477 18211953 ~ 18213811 (+) False gpr1
XM_039817971.1 mRNA upstream 228478 18211952 ~ 18213810 (+) True gpr1
XM_039817546.1 mRNA downstream 80940 18535567 ~ 18581030 (+) True uggt2
XM_039818771.1 mRNA downstream 156733 18611360 ~ 18651667 (+) True LOC120570426
XM_039818772.1 mRNA downstream 156733 18611360 ~ 18638058 (+) False LOC120570426
XM_039818773.1 mRNA downstream 160837 18615464 ~ 18651667 (+) False LOC120570426
XM_039817076.1 mRNA downstream 220660 18675287 ~ 18677482 (+) True sox21b
XR_005640963.1 other upstream 424875 18010757 ~ 18017413 (+) False hnrnpa3
XR_005640989.1 other upstream 561562 17860160 ~ 17880726 (+) False hoxd10a
XR_005640990.1 other upstream 561562 17860753 ~ 17880726 (+) False hoxd10a
XR_005640988.1 other upstream 561562 17860872 ~ 17880726 (+) False hoxd10a
XR_005641003.1 other upstream 1264648 17127881 ~ 17177640 (+) False myo3b
TU168229 other downstream 248401 18703028 ~ 18704528 (+) True G125079
XR_005640959.1 other downstream 1720201 20174828 ~ 20265238 (+) False myo16
XR_005640960.1 other downstream 1720201 20174828 ~ 20265148 (+) False myo16
TU168970 other downstream 2037551 20492178 ~ 20521274 (+) False G125627
TU169140 other downstream 2398462 20853089 ~ 20858910 (+) True mpc2b

Expression Profile