RNA id: TU168266


Basic Information

Item Value
RNA id TU168266
length 501
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G125101
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 18827860 ~ 18828360 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

taaattgtgtaattttttgtgttgattcttagcaaaaacccctttgttctttcacaaatatgtgcttgttcatgtgtaattacttccaccgactaatcaaagtattctcgtaagcgtagaatctgccattcagattCATTGAGAATACATAGGAATGAGTCACTCaaatgacggccgccatgttgcACCTCCCTCTTTAAAATatattagccaaagagggacatacctctgcCTTTCGTGCTTTTACACTCCGtagcaccgtgacgaatgccagggaggaggagaagattactcgcgactgccggcagatttgaaagcctgttgaaaaTGGAGGATCACACCTATTCTCGAGGACATGTAACGAAGTCGCCAAGGAAgctaaaaaaagaattaaaaggaCAACgcaacaggcaaagcaacaagatcAAAGTTAATAGCCTATcggagtggcttttccaagatgaaaagagctcataaggagcaaggattttaaaagggaca

Function

GO: NA

KEGG:

id description
ko00190 Oxidative phosphorylation
ko05012 Parkinson disease
ko04932 Non-alcoholic fatty liver disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168268 lncRNA upstream 739 18826755 ~ 18827121 (+) False LOC120570507
TU168263 lncRNA upstream 11803 18815539 ~ 18816057 (+) True G125098
TU168058 lncRNA upstream 362040 18465586 ~ 18465820 (+) True G124976
TU168047 lncRNA upstream 373233 18442288 ~ 18454627 (+) True G124966
TU167992 lncRNA upstream 530240 18234042 ~ 18297620 (+) True G124924
TU168269 lncRNA downstream 326 18828686 ~ 18828913 (+) True G125104
TU168274 lncRNA downstream 573 18828933 ~ 18829526 (+) True G125109
TU168275 lncRNA downstream 1259 18829619 ~ 18829908 (+) True G125110
TU168279 lncRNA downstream 17047 18845407 ~ 18851795 (+) True G125114
TU168280 lncRNA downstream 24206 18852566 ~ 18855030 (+) True G125115
XM_039818899.1 mRNA upstream 313 18818753 ~ 18827547 (+) False LOC120570507
XM_039818896.1 mRNA upstream 313 18822577 ~ 18827547 (+) True LOC120570507
XM_039818898.1 mRNA upstream 313 18822594 ~ 18827547 (+) False LOC120570507
XM_039818923.1 mRNA upstream 125308 18695106 ~ 18702552 (+) True dct
XM_039817076.1 mRNA upstream 150378 18675287 ~ 18677482 (+) True sox21b
XM_039817056.1 mRNA downstream 99183 18927543 ~ 18931474 (+) True si:ch211-199f5.1
XM_039818300.1 mRNA downstream 103060 18931420 ~ 18935948 (+) True cnmd
XM_039818442.1 mRNA downstream 119559 18947919 ~ 18953681 (+) True LOC120570212
XM_039818438.1 mRNA downstream 128333 18956693 ~ 18962174 (+) False LOC120570209
XM_039818437.1 mRNA downstream 128333 18956693 ~ 18962174 (+) True LOC120570209
TU168229 other upstream 123332 18703028 ~ 18704528 (+) True G125079
XR_005640963.1 other upstream 810447 18010757 ~ 18017413 (+) False hnrnpa3
XR_005640989.1 other upstream 947134 17860160 ~ 17880726 (+) False hoxd10a
XR_005640959.1 other downstream 1346468 20174828 ~ 20265238 (+) False myo16
XR_005640960.1 other downstream 1346468 20174828 ~ 20265148 (+) False myo16
TU168970 other downstream 1663818 20492178 ~ 20521274 (+) False G125627
TU169140 other downstream 2024729 20853089 ~ 20858910 (+) True mpc2b
TU169142 other downstream 2031792 20860152 ~ 20865442 (+) True G125757

Expression Profile