RNA id: XM_039818300.1


Basic Information

Item Value
RNA id XM_039818300.1
length 1488
RNA type mRNA
GC content 0.45
exon number 8
gene id cnmd
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 18931420 ~ 18935948 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGTTTGTGAGAAGCAACAGTATTAGTGGAGGAATTATAGAGGGCATCACGATAGAGACAATGGAAAAAGTCCCAAATACCACTCATGGATCTTCTGGCTGTTTTGAACACTGTACACCTCCGGAACAAAACAGCACACCGACATCTGCTGCGGTCAGTCGCCTCCTGAGATTCGGAGCCGTGGCTCTTATTGTTGGTGCAGTGTTGATGTTGTGTGCTTCCATGGCTGCTCTCTACCTGTGGAAAGGCAGTGATAAAAATGTTTATAATGTCCGTTACAGTATGAGCATCAATGGGGAGGTGAGACAGGGCTCCGTGGAAATTGATTCAGACAACAACGTGGAGAGATTTAAAACTGGGAGTGGAGCTGAGGAAGCTGTGGAGATTCATGACTTTCAAATTGGAATAACCGGAATCCGCTTCTTTGGAGGAGACAAGTGCTATATAAAATCCCAAATCAAAGCCAACCTTCCACACATGGGAGCTCACAACAAAGAGTCGCTGATGTTTGACCTGACAGATGAAGCTATTCCAGTGAGTTTTGACGAGAAGTTCCTCATATGGATTTCTGCCGAGCAGCCGCTCAAGGACACCAGCTTTCTGAGCAACAAAATTCGGGGTCTTTGCGGGGAACTTCCCATTTACTGGCTCCAACCTATCTATCCTAAAGATggggagaggagaaaaagagacacacagcGAGCCAAACGGCAGTTTAACATAGAGGAGTTTGAGGCAGCTGCTGAAGAGAGGAACCCGGTGAGTCACGCAGAAGATGACACCTCCAGAGtcagggaagaagaggaggagggggcacAGTCTGCTGCAGGGTCAGCATACAATCCCGAAAACCCCTATCATCGCAGTGGAGGTGCTGGAGAGGAAGGTGCCATGACCTTTGACACCATGTTAGACCACCAGGGGATCTGCTGCTCGGAATGCCAACGCAGCTACACTCACTGTCAGAGAATATGCGAGCCTTTGCATGGCTACTGGCCGTGGCCTTACAACTACAGAGGATGCCAGGTAGCTTGCCGAGTCATTATGCCCTGCCGCTGGTGGGTGGCACGTATTTTAGGTGTTGTGTAAGAAAACACGCTGCACTTGTGAGagaatatatctttttttttgttagtaaGACCCCAAGGGTTCCTAAACTTTCAGTTCCTATGCAGTTATGCATGCATATAGGTATTTTCTGAGTTTGACTGTAAATACTGTTTAGAAAGCTATGCATGTTAGCATGAAATGAAGATCATGATGTATGATTATCTGTACTATGATACATATACTGATAATTGTCCTCCATAcaaaatattttacatataAACAGGTGCTTTCTCTTTGGCTACTTATTTTCATATAGCAAAACTGGAATATATAAATGCCATATTCCTATTTACAGCAACAGACTTACAAATGAGCACATTCATTTTTGCATCATGTAATACTAAAGCTTAATGTGCTGTGCTATGTTCAATGGAAGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168280 lncRNA upstream 76390 18852566 ~ 18855030 (+) True G125115
TU168279 lncRNA upstream 79625 18845407 ~ 18851795 (+) True G125114
TU168275 lncRNA upstream 101512 18829619 ~ 18829908 (+) True G125110
TU168274 lncRNA upstream 101894 18828933 ~ 18829526 (+) True G125109
TU168269 lncRNA upstream 102507 18828686 ~ 18828913 (+) True G125104
TU168369 lncRNA downstream 153502 19089450 ~ 19090785 (+) False tmsb4x
TU168492 lncRNA downstream 520149 19456097 ~ 19459225 (+) False igsf3
TU168499 lncRNA downstream 531484 19467432 ~ 19468790 (+) True G125266
TU168502 lncRNA downstream 555590 19491538 ~ 19586655 (+) True G125267
TU168513 lncRNA downstream 615410 19551358 ~ 19551941 (+) True G125274
XM_039818899.1 mRNA upstream 103873 18818753 ~ 18827547 (+) False LOC120570507
XM_039818896.1 mRNA upstream 103873 18822577 ~ 18827547 (+) True LOC120570507
XM_039818898.1 mRNA upstream 103873 18822594 ~ 18827547 (+) False LOC120570507
XM_039818923.1 mRNA upstream 228868 18695106 ~ 18702552 (+) True dct
XM_039817076.1 mRNA upstream 253938 18675287 ~ 18677482 (+) True sox21b
XM_039818442.1 mRNA downstream 11971 18947919 ~ 18953681 (+) True LOC120570212
XM_039818438.1 mRNA downstream 20745 18956693 ~ 18962174 (+) False LOC120570209
XM_039818437.1 mRNA downstream 20745 18956693 ~ 18962174 (+) True LOC120570209
XM_039818439.1 mRNA downstream 20745 18956693 ~ 18962174 (+) False LOC120570209
XM_039818441.1 mRNA downstream 20745 18956693 ~ 18962174 (+) False LOC120570209
TU168229 other upstream 226892 18703028 ~ 18704528 (+) True G125079
XR_005640963.1 other upstream 914007 18010757 ~ 18017413 (+) False hnrnpa3
XR_005640989.1 other upstream 1050694 17860160 ~ 17880726 (+) False hoxd10a
XR_005640959.1 other downstream 1238880 20174828 ~ 20265238 (+) False myo16
XR_005640960.1 other downstream 1238880 20174828 ~ 20265148 (+) False myo16
TU168970 other downstream 1556230 20492178 ~ 20521274 (+) False G125627
TU169140 other downstream 1917141 20853089 ~ 20858910 (+) True mpc2b
TU169142 other downstream 1924204 20860152 ~ 20865442 (+) True G125757

Expression Profile