RNA id: XM_039818442.1


Basic Information

Item Value
RNA id XM_039818442.1
length 1805
RNA type mRNA
GC content 0.45
exon number 13
gene id LOC120570212
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 18947919 ~ 18953681 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGAGTCAGTCTCCATCCTACCAGAGAGATTCTTCCTCTGCATCTCCTGAGAGTCCTAAAGAAGGTGACATCTCCCCTCTACAGCTTTATGACAACCTGAAGAGCCTGGAGGAGCATGAGACATGTGACGACCAGAAAGATCCCATTGCCAACATCATAACTGACAACTACTCCAGCTCTCGTTTAAACACTCCGCTAGCGGCAAATGACCTTGGGAAGCTACGTGCTGGCATTGTTCTACAAGAACAAGCGATTAAGAAAAGTAATTGCAGAGAACTGAGATGCTTCAGTACATCGCCTATAAAAAAGAAGCCTCCGGTCTCACCAGAGTTCATGGAGGTGCTTGCGTTGGATGGAAGATTGATTACTTTGGTGAGCGCTCAGTGCCAGACAGATTGGGAATGGGTGGAGCAGagtctctctttcagctgtCAAGTTCAAAAGGAAATTGAAGATCCCCAGTTGTTGCAGGCAGAGGTGGTGAGCATGGACACTGTCGCTGATTCTTCTGAGGAGCCAGAGAATGAAAAGATTCCAAAGACGGAGCATGATATATCTTGTGTGGGTTCGCCTCGTCTCATAGCATACAAGCCAGAGCCAAAACAAACTTCTTATGTTGAAAAGGTTCCAGAGGTTGAATCTAAACAGGATGTGCTTCATGCTCAGTGTGACTATTGCCAGCAGCTCTGTCAGCCCTTTATACAAAGTGAACTGTTGGAAAATGAAACAGACTTTGAGAGGctCTTTTGTTGTGAGCTAGCTAAACAAATGAGAGAGCTTAtaattggagagagagagaaattggcAGAGGAGGAGTCAGACAGGAAGATTGATGTGAACCCGCATGTCCCTGTCATGAgtgaggaggagaggacagCTGCTAAAGAGCGGGCGAAGGAGAGGTTGAGACTTTTTCAACTCCAGAGAAAACCTAAAAAAGACAACTTGAATATAGACATGAGCCATATAGATGCCAAACATAACACCTGCCACAGGCTGTCAAAAAAGATTCCCTGTGTCAATAATGGGCCTCACATTCTTCAGATAAATATGAACAAGATTACTGACTTGTTTGAactacacaaagagacacatggTGAGCCAAAGCTCAAGTTCTACAAAAGTGGGAAAAGTTTTCTCATCTTGTTTCCAGATGGAACAGGGAATGTTTTTTATCCTTCTGGGAAAGCAGCCATTATAATATCATCTGCAGAAGATGCTGACTTCACTTACATTATCTTGGAGGACAAGGACGAAGCACCCAGCATCAAaggcattttcacaaataaaggcGACGCCATATGCTATCATCCCAATGGAAGGATGTGGTTGAATCTGACCCATGTTGGAGGTATCTGCTTCAGTGAGACAGGAGCTTTGAGGAGGCGCTGGAATTGGTTGTATCGTGCCCCGCATGTACGTAATCTTCCCTTCAAGCCGCTAACCTTTACCCTGGGCCAACACATCAGTGTGCGCATACACTCAAAACAACGCATGTACATTACCTTTTCATGTCAGCAGAACAGCGTGCACTTCAATGTGGGGTCAAAGCTTGAGctCATTTATCCAGAGAGCCATGACAAGCCGGGGCAAGACACTCTGCAGAGCTATACCAAAAAGAAGAGCTCAGAGATTTACTCTCTGCTTGGCCAGATGCAGACCTGCATGTCCCACCACTCTTCAAGCCTGAGCAACATTAAGCCACATTACCGTTTCATTGCCCAGACGCAAAAGGAGAAGTCACCCGAAACGATAAAGGCCAATGTAAATAAAGAGATAAATACAGACTAGGCAAAAGCTGATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168280 lncRNA upstream 92889 18852566 ~ 18855030 (+) True G125115
TU168279 lncRNA upstream 96124 18845407 ~ 18851795 (+) True G125114
TU168275 lncRNA upstream 118011 18829619 ~ 18829908 (+) True G125110
TU168274 lncRNA upstream 118393 18828933 ~ 18829526 (+) True G125109
TU168269 lncRNA upstream 119006 18828686 ~ 18828913 (+) True G125104
TU168369 lncRNA downstream 135769 19089450 ~ 19090785 (+) False tmsb4x
TU168492 lncRNA downstream 502416 19456097 ~ 19459225 (+) False igsf3
TU168499 lncRNA downstream 513751 19467432 ~ 19468790 (+) True G125266
TU168502 lncRNA downstream 537857 19491538 ~ 19586655 (+) True G125267
TU168513 lncRNA downstream 597677 19551358 ~ 19551941 (+) True G125274
XM_039818300.1 mRNA upstream 11971 18931420 ~ 18935948 (+) True cnmd
XM_039817056.1 mRNA upstream 16445 18927543 ~ 18931474 (+) True si:ch211-199f5.1
XM_039818899.1 mRNA upstream 120372 18818753 ~ 18827547 (+) False LOC120570507
XM_039818896.1 mRNA upstream 120372 18822577 ~ 18827547 (+) True LOC120570507
XM_039818898.1 mRNA upstream 120372 18822594 ~ 18827547 (+) False LOC120570507
XM_039818438.1 mRNA downstream 3012 18956693 ~ 18962174 (+) False LOC120570209
XM_039818437.1 mRNA downstream 3012 18956693 ~ 18962174 (+) True LOC120570209
XM_039818439.1 mRNA downstream 3012 18956693 ~ 18962174 (+) False LOC120570209
XM_039818441.1 mRNA downstream 3012 18956693 ~ 18962174 (+) False LOC120570209
XM_039818440.1 mRNA downstream 3787 18957468 ~ 18962174 (+) False LOC120570209
TU168229 other upstream 243391 18703028 ~ 18704528 (+) True G125079
XR_005640963.1 other upstream 930506 18010757 ~ 18017413 (+) False hnrnpa3
XR_005640989.1 other upstream 1067193 17860160 ~ 17880726 (+) False hoxd10a
XR_005640959.1 other downstream 1221147 20174828 ~ 20265238 (+) False myo16
XR_005640960.1 other downstream 1221147 20174828 ~ 20265148 (+) False myo16
TU168970 other downstream 1538497 20492178 ~ 20521274 (+) False G125627
TU169140 other downstream 1899408 20853089 ~ 20858910 (+) True mpc2b
TU169142 other downstream 1906471 20860152 ~ 20865442 (+) True G125757

Expression Profile