RNA id: TU168263


Basic Information

Item Value
RNA id TU168263
length 519
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G125098
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 18815539 ~ 18816057 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTTTGCATAGAAGTGAACCCTTTTAAAAACTTATAATTAAATGTTGACAATCTTAGACAGCCCAGATACTGGTAAGTGTCCACCTTCATGACTAAATTTAATTGATTTACCATGAAACAAAAGCATTGAATTTTTATTGTGAATTATAAACACCCTAAAAAGACAGgtatatgattattttttttacaattataaCAAGTATATTCTTTGCAGTAAAGCACTTTCTTTTAATCTGCTCAGACATTCAACCAGGATAgatatctatccatccatccatcaagtgaaaaagcaaaaaatacatcagtgagccaatggaaatatttatttttaatgttgaATTTGTCAAACCCTATCATTACAGTATCATTAGTGACAAGATGGATGGTACATAAGGATTATAAACATTTTGTATTAGATATAAGAGAACCATTTCACAGTTAACCTTTGTGCAGAACAATTCCCCATGTCCTCAACAGGCCGGGACAAGTGCAATACCACACAAGTACAGAGCATTGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168058 lncRNA upstream 349719 18465586 ~ 18465820 (+) True G124976
TU168047 lncRNA upstream 360912 18442288 ~ 18454627 (+) True G124966
TU167992 lncRNA upstream 517919 18234042 ~ 18297620 (+) True G124924
XR_005640983.1 lncRNA upstream 523096 18291410 ~ 18292443 (+) True LOC120569814
TU167982 lncRNA upstream 626407 18188840 ~ 18189132 (+) True G124915
TU168268 lncRNA downstream 10698 18826755 ~ 18827121 (+) False LOC120570507
TU168266 lncRNA downstream 11803 18827860 ~ 18828360 (+) True G125101
TU168269 lncRNA downstream 12629 18828686 ~ 18828913 (+) True G125104
TU168274 lncRNA downstream 12876 18828933 ~ 18829526 (+) True G125109
TU168275 lncRNA downstream 13562 18829619 ~ 18829908 (+) True G125110
XM_039818923.1 mRNA upstream 112987 18695106 ~ 18702552 (+) True dct
XM_039817076.1 mRNA upstream 138057 18675287 ~ 18677482 (+) True sox21b
XM_039818771.1 mRNA upstream 163872 18611360 ~ 18651667 (+) True LOC120570426
XM_039818773.1 mRNA upstream 163872 18615464 ~ 18651667 (+) False LOC120570426
XM_039818772.1 mRNA upstream 177481 18611360 ~ 18638058 (+) False LOC120570426
XM_039818899.1 mRNA downstream 2696 18818753 ~ 18827547 (+) False LOC120570507
XM_039818896.1 mRNA downstream 6520 18822577 ~ 18827547 (+) True LOC120570507
XM_039818898.1 mRNA downstream 6537 18822594 ~ 18827547 (+) False LOC120570507
XM_039817056.1 mRNA downstream 111486 18927543 ~ 18931474 (+) True si:ch211-199f5.1
XM_039818300.1 mRNA downstream 115363 18931420 ~ 18935948 (+) True cnmd
TU168229 other upstream 111011 18703028 ~ 18704528 (+) True G125079
XR_005640963.1 other upstream 798126 18010757 ~ 18017413 (+) False hnrnpa3
XR_005640989.1 other upstream 934813 17860160 ~ 17880726 (+) False hoxd10a
XR_005640990.1 other upstream 934813 17860753 ~ 17880726 (+) False hoxd10a
XR_005640988.1 other upstream 934813 17860872 ~ 17880726 (+) False hoxd10a
XR_005640959.1 other downstream 1358771 20174828 ~ 20265238 (+) False myo16
XR_005640960.1 other downstream 1358771 20174828 ~ 20265148 (+) False myo16
TU168970 other downstream 1676121 20492178 ~ 20521274 (+) False G125627
TU169140 other downstream 2037032 20853089 ~ 20858910 (+) True mpc2b
TU169142 other downstream 2044095 20860152 ~ 20865442 (+) True G125757

Expression Profile