RNA id: XR_005641092.1


Basic Information

Item Value
RNA id XR_005641092.1
length 1705
lncRNA type inter_gene
GC content 0.43
exon number 5
gene id LOC120570651
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 20667680 ~ 20679076 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ccaccactgggaTCAGCAGACGTCCTTCAGAGACCACTTTTTGGTAGTTTAAAGAAAACCTACTATCTGTCTTTAATACATGTTAAGTCATAGTTGTTTCTTCTGATAATAACTTTTCCAACCATGATGAAGGTGATGGAGAGACTATGCTAGAAGACAGTGTCCTTCTACCATGCGCCTGCTCAGAGAGAAATTTGCACAAGGAGTTTAAGTGGCAGAAGGAAGAACCAAACCGGTCATTGATCTTCAAAAACAACCCCACCATTTCATACTTCGACTCCAAATACACGGACAGGGCCAAGATATTTCTGTCTGAAAACCGCGATAACTGCTCTTTCTCCTCACCAACGTCACAGAGGATGACCAAGGGAAATACAGATGCAGTTTTCGCAAGCAAGAGGAATACcagtatttttttgtatatctAAACGTTTCTGCATGCTACACTGTCTGCCAGACACTTCAGGGTGGAAGtgtaaattttcaccagtgtTATGTAAAAAAACGCTACAGAGAGACTGAGATTCAGTGGATTGTGGGTGGACAGCTTCTTACagaatcaaacacaactaacaTAAACAAAACCTACACCATGGATGCTTCTACTGGCCTCTACCATTTCAACAGCACACTCAAGTGGACTGTAGACCCTACATGTCATACCAACCGCATACCAACAAATACTGAACCTAATAAGGGAGATCCAGACAGCGCCCGATACCGGTActtaacaatcattcccattTTGTTGGTGCTTGGACTTTCCCTGCTCTTGTGGCGCCGTTGGGACACACAGAGTTCATAAAGGATACGAGAAGTGGGGGCTGACAGCTTCTACTGCTAAACACACAATGAACTCTAATGTGAGGCAATTTCCACCGAACTGATTAGTCATGGATATGGCATCATGCCCACGCAGGTTACATCCTGTTTTCATGCCGCTCAAGGAATGGGGTGTTTCGGAAAAGGATGTCCATCTTGTGAGCTTTTATGGATGTTTGCAGGCAGGTGTTTATATTCTTTCCTTTCAAATTCAAGGATTGTAAAAAGAAATTTTCCCTTTACGATATGAAGATGAAGTGATATGTTTCAATTAGGATGGAACGGTTCAAGTAAAAGACATTATGCCAGTGTGTCCGTTGACAGTGCAAGTAGGAGAGAGTTAGACGGGACAATCCAATCTGCAGCTAAAGCATTACATATTATAGAGAAAGATGGATGCAGGATTTCAGCATATGATTAAAGTAACATTACTTGAGCCGCTACATTCGCAAACCTTTCAGTAGCGTCCGAACTtgcaaaggaaaataaaaatagaatgcAGTGCTATTTTGAAAACcgtgtacagtgtgtgttttggttATGCTGCACTTAGTCAATGTCCTTGATGTTCCACATCTGGGTTTGCTCCGTTGTCGCTGGAAAATCCgtcggatttcactcatttaggccggatatccgttgccttgggcttttgTGTTGTAACtccggttgatttatgagggccatggttaaccttttctcagatctctgcagggtaaatccagacagctagctagactatctgtttaATTGAGAATTTGGTTGCATgactaaaataacttttaaacgtacacgttccaccaaaactatttccttccgagcctattttgcagcggcaccgcagcCTTTCTccagtgcttagcaccgcccaagacgattgtga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169033 lncRNA upstream 22821 20649273 ~ 20651869 (+) True G125675
TU169018 lncRNA upstream 43496 20594040 ~ 20631194 (+) True G125662
TU169024 lncRNA upstream 63026 20603691 ~ 20611664 (+) True G125668
TU168969 lncRNA upstream 178475 20492178 ~ 20496215 (+) True G125627
TU168967 lncRNA upstream 182531 20491688 ~ 20492159 (+) False G125626
TU169071 lncRNA downstream 8725 20686697 ~ 20687047 (+) True G125702
TU169089 lncRNA downstream 34434 20712406 ~ 20713194 (+) True G125718
TU169119 lncRNA downstream 117073 20795045 ~ 20825545 (+) True G125738
TU169132 lncRNA downstream 154522 20832494 ~ 20835754 (+) True G125749
XR_005641074.1 lncRNA downstream 226022 20903994 ~ 20911358 (+) True LOC120570516
XM_039817758.1 mRNA upstream 25524 20641212 ~ 20649166 (+) False gabpa
XM_039817759.1 mRNA upstream 25524 20641400 ~ 20649166 (+) True gabpa
XM_039818459.1 mRNA upstream 120336 20544377 ~ 20554354 (+) True sik1
XM_039817239.1 mRNA upstream 184181 20485226 ~ 20490509 (+) True ing1
XM_039818597.1 mRNA upstream 189629 20480817 ~ 20485061 (+) False naxd
XM_039818880.1 mRNA downstream 21259 20699231 ~ 20706004 (+) True piga
XM_039817120.1 mRNA downstream 29269 20707241 ~ 20710700 (+) True asb11
XM_039818275.1 mRNA downstream 46888 20724860 ~ 20734285 (+) True xk
XM_039818569.1 mRNA downstream 60820 20738792 ~ 20774655 (+) True sytl5
XM_039818570.1 mRNA downstream 60820 20738792 ~ 20774655 (+) False sytl5
TU168970 other upstream 153416 20492178 ~ 20521274 (+) False G125627
XR_005640959.1 other upstream 409452 20174828 ~ 20265238 (+) False myo16
XR_005640960.1 other upstream 409542 20174828 ~ 20265148 (+) False myo16
TU168229 other upstream 1970162 18703028 ~ 18704528 (+) True G125079
XR_005640963.1 other upstream 2657277 18010757 ~ 18017413 (+) False hnrnpa3
TU169140 other downstream 175117 20853089 ~ 20858910 (+) True mpc2b
TU169142 other downstream 182180 20860152 ~ 20865442 (+) True G125757
XR_005641085.1 other downstream 941376 21619348 ~ 21627452 (+) False sox1a
XR_005641000.1 other downstream 977159 21655131 ~ 21688802 (+) False LOC120569986
TU169945 other downstream 2129221 22807193 ~ 22815102 (+) True G126363