G125675 (LOC106940919,LOC102232862,LOC103459816)


Basic Information

Item Value
gene id G125675
gene name LOC106940919,LOC102232862,LOC103459816
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 20649273 ~ 20651869 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU169033
TCAAAATTTTATTCATGGTATACCGAGTGTAGAAAGCTTTTTCTTACTCCAAGCAAATGGTTCATGTAACTACACAGAGGGTCACTGAATCAATGAAAGGAAaaaagcatcttttttttttttaacacaagactCCAAAGCCACCCAGAGTGAGCATCAATACAAACTTTAAACATTGACCTGATTAAGAGCTTCAATTAGTGTGTCTGTACACTACACACATGGACATAATGTGTAGAGAGGTGATATGTGTTGTATTTCTATGGTATAAAAGCACAATATGCATGTCACATTCATGTTTACTGGAGGTGGCATTAATAACTCTGTTAAGGGAGAGGGAAATGTGTCTATGCTGATGGGAGTTGTGGTCATCCTCACGAGGACCGTTAAGTCTTGAAAACAGATATGGCAAAGAAATATCTGCCACAGGACAAACAGAAGCACTGCACATGTATAGACAGGAAATGTAGAAAAATAGAATGTGCATGTGAGATCTTGTGAAGGAATGTGTGTGAAGAGGAGAAAACATTTGATCTTTGTGGGCCAAACAAGTCccgtcataaaaaaaaaaaaaaaaaaatcaaaaaagctGTGCTGTACAATATTGCTGACATGGCCAAAAAGAGGGTAAACGGGACAAATGAGGCTAAGATGGAAAGACGGATGAACACATGAACAAGGGGGAAAAAATTGAGAAGTGGAGATTGATAATGAAACTGGGCAAGAGAGTCAGATTTTGATCttccaaatatatatttacagtcaaaaagagagaggggaatgatAAATCTGGAATGATACACTTTCAGAAAACATCCTTTCTAAAGTTTGACCAGGGTGAATTGGCATTAGGGGCTTAACAGCAATAATATTTGGTGATAACAATCAGACTTCCAATATGACAGAGTGCATAGAACGCAAACAGTAACAAAATTTTCTTCCTTTCGGATACTATTACACTTCATATATTACTGTACATATAGAGCATTTTGCCCATGCAGCTAACACAACAGTGAAGCATGGAGATGAGCGTAATGAGCCAAGATTCAGTTAAAGCAAGTCTGTGTGACAAAGCAGACTGGGTTCTGAAtactcttttgtttttttttgttttttttcttcttcatatcACAAGATCACAAAGAAGACACTAGAAATGTACAATCCTGCTAAAATATCTAGTAAGAGGACCGCTCCCGAGGAcctcaacatacagtatactctaTTTGTCATCAACATTGCCATGCACTACATATACTTACAGCTAATCTCAGTCTTAATAtattacacataaaaaaaaaaaaaatcaaaaaaaaataatcagaaaacaaaacattcaataATCTTCAACTTTTACATATGTTGATTACATATCAtttttctgagtttttttctccttttttgaaaaacaaacctGAAACAGTTGGGCTTTAATTGTGCGAGGAGGTGCTCTGAGAGCCCCTCCTGCCATCGCCAGCTCTAAGAGCTGTTATGTCATCAAACACAGCACATCTGTCATCGGAGAGGGGGGGTGAGTGGAGCAGTTGGGGCGATGAGGGAGAGACTGGGAATTAAACTGCTTGGATTTACACGTTTCTGGTCTCAGAGACTTGATATAAATCATCAACAGGGTTTTTCTGTAAAAACACTGACGTTTTTGTTGTGATTGGCTGAAAAGTGCAGGTGAAACAGGGTACCCTTGTCTGATCAATGGCAGGCAAATGTGAGCTCAAGTGGCTCTTTACAATCGAGGGATTAAGAAGGCTTTGTTCCATGTCATTTTCCTTTGGCCCAAACCCCTGACTGAAACATTAACTGATACAAAGATTTCActgatcttttcctaaccttCAAAAACAAGTTAAAAATCAGCCTTTGCAGTACTCCTCCTTTAACAGGGCGAGAAAGTGAGGGTGTTAGGGGCTGAGGGCAAGGGACCAGAATGGAACAGACCCTACGAGTGAGAGTGTCGGGGTACGTCTGGAGAAAATGTCGAGCCGTTCTTTAGTTCTGCATCTGCTCGAAAAATTTGTAGGTGGGATTCTCGTAACCGTTCTGCTGCATCTTGGCCAGATGACGCTCCTCTGGTGTCACGGCTGCATCCACCTCGATTACACCATGATGAATGGAAGTATATTGTTTCTTCCTCAGCATCACTAAGGTAATGACGATGACAGTTGCTATGACAACCCCTCCAACCATAAGTCCAATAATGGCACCTTTATTGGACCCCACATCCTCAGCGAAAAACAcctgtcataaaaaaaaaaacgaagctATTTATGTGCACAAAGTGCAGACACCACTGCACCAAAAAGAAATGACATGATGATGTGGTTTTTTATACCAGTTTTTGATGGTAAACTTCATAACCAGCACTTTGCCCCTCTTCAGTCTCCGTCCGCACTTTGGGCATCTCCTCTGGCTTCAGGGCAGATACTGAAACCAAATACACAGACAGggtatttaataaa

Function

NR:

description
centrosomal protein of 162 kDa

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU169033 True 2474 lncRNA 0.40 2 20649273 20651869

Neighbor

gene id symbol gene type direction distance location
gabpa gabpa coding upstream 107 20641212 ~ 20649166 (+)
sik1 LOC103352856,LOC102193135,LOC102291704,LOC101480385 coding upstream 94919 20544377 ~ 20554354 (+)
ing1 ing1 coding upstream 158764 20485226 ~ 20490509 (+)
naxd naxd,LOC102782328 coding upstream 164212 20478711 ~ 20485061 (+)
col4a2 col4a2,LOC107557913 coding upstream 177749 20389518 ~ 20471524 (+)
piga piga coding downstream 47362 20699231 ~ 20706004 (+)
asb11 LOC104950685,LOC102779537,LOC102313943 coding downstream 55372 20707241 ~ 20710700 (+)
xk xk coding downstream 72991 20724860 ~ 20734285 (+)
sytl5 sytl5 coding downstream 86923 20738792 ~ 20774655 (+)
otc otc coding downstream 157449 20809318 ~ 20813381 (+)
G125662 NA non-coding upstream 18079 20594040 ~ 20631194 (+)
G125668 NA non-coding upstream 37609 20603691 ~ 20611664 (+)
G125626 NA non-coding upstream 157114 20491661 ~ 20492159 (+)
G125577 NA non-coding upstream 318614 20330387 ~ 20330659 (+)
G125547 NA non-coding upstream 380145 20228728 ~ 20269128 (+)
LOC120570651 NA non-coding downstream 15811 20667680 ~ 20679076 (+)
G125702 NA non-coding downstream 34828 20686697 ~ 20687047 (+)
G125718 NA non-coding downstream 60537 20712406 ~ 20713194 (+)
G125738 NA non-coding downstream 143176 20795045 ~ 20825545 (+)
G125749 NA non-coding downstream 180625 20832494 ~ 20835754 (+)
G125627 LOC108259060,LOC105016494,LOC108266561,LOC104955100 other upstream 127999 20492178 ~ 20521274 (+)
myo16 myo16,LOC103372229 other upstream 383683 20153855 ~ 20265590 (+)
LOC120569357 LOC103369896,LOC102289365,LOC102197623,LOC101484406 other upstream 655949 19968360 ~ 19993324 (+)
igsf3 LOC103352919,LOC104967650 other upstream 1189999 19388015 ~ 19459274 (+)
tmsb4x NA other upstream 1558488 19089418 ~ 19090785 (+)
mpc2b mpc2 other downstream 201220 20853089 ~ 20858916 (+)
G125757 rpl24 other downstream 208283 20860152 ~ 20865442 (+)
sox1a LOC103372296,LOC101481640,LOC100691128 other downstream 967479 21619348 ~ 21634757 (+)
LOC120569986 LOC103372298,LOC100698342,LOC102199663,LOC102299751,LOC101469554,LOC102782232 other downstream 1003257 21655126 ~ 21691804 (+)
fbxl3a fbxl3 other downstream 2079054 22730923 ~ 22738653 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) LOC110520491 LOC106586687 misc NC_048567.1 CM023221.2 69980268 ~ 70034765 (+)