col4a2 (col4a2,LOC107557913)


Basic Information

Item Value
gene id col4a2
gene name col4a2,LOC107557913
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 20389518 ~ 20471524 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039818301.1
TTTGACTTTTCTCGGTAAGGAGAGGGACTACTCGGCACActttggtgtgtttttgtgtgaataTTTGAACAGGCTTTGGTGCCACAGGTAGCTCTTTTGAAACTTTTCAGCCCGGGAACCCGCGCATCTCTTGGCCCGTGATATCCATTTCCTTCACCTTACCTCCGCACGCAAGACTGGGGTGACTGTCGGGCAGTCATGCTGTAGAAGTGCTCTACAAGTGAAAAAGTGGAACTCAAGTTTGCGGTGCGCATGAGCAGGACCATGCAAGGACAACACAACAGAGGACTGGAGAAACTGAGGCTGCTGCTTCTGTGCCTCTCCATTGCCATCCTCGCCTCAGGAGTGCACGCGGGTGGGAAGAAGGACAGTGGCCCGTGTGGAGGAAGAGACTGCAGCGGAGGCTGTAAATGTTTCCCAGAGAAGGGTGCCAGGGGTCACCCTGGTCCTCTAGGTCCTCAGGGCTCCCAGGGGCCTCCAGGGAGACCAGGTGATCCAGGCATCCAAGGACCAAAGGGGCAGAAGGGTGACCGCGGCCGTAGTGGCATCATAGGTCCTAAAGGAAATGtgGGAATGACCGGCGTTCCTGGGTTTTCTGGAAATGATGGCATTCCTGGCCATCCAGGACAAGCTGGGCCAAGGGGCAGGCCAGGTGCAGACGGCTGTAACGGGACACACGGAGAATCAGGGTTAATGGGGCAACCCGGCTTTAATGGCGCACCTGGTTTTCCTGGACAGCCAGGCTGGAAGGGACAGAAGGGAGACTCTCTGGAGCTCACTGTGTACATGGAGCGCTTCAGGGGAGATCCAGGCACACCAGGGCCCAACGGAAGATTTGGGCCTCAAGGAAACCCAGGACAGCAGGGTCATAAAGGCTTCCTAGGTCCAAAGGGTCCCCCAGGGCCTCCAGGTCCCCGTGGACCAAAGGGCACTATGACCAAAGTGATTAAGGGACTCAAAGGAAAAAAAGGGGACACCGGACCACCAGGGCCGCCAGGAAACTCTACTCATCAGCTAATTAAGCCCCCCTACGGCCCCCCGGGTCCATCTGGTGCAGATGGGCGTCCTGGACCAAGGGGGGATTTTGGTGAACAAGGACCAAAAGGCAGAGATGGTCCTAAGGGAGTCAGAGGTGACCCGGGAGAACTGATTTCATCAGGAAACTGGCCCTGGATTTCAGGAGCTGGTCCTACCGGTCCTCCTGGTGAGCAGGGtccacagggagagagaggcccGGTTGGAAACCAAGGCTTCCCCGGACCCCCAGGACGCCCCGCCTCTGAAACGCAGCAACAAGTTTGGGATTTCATGGGGCCATTTGGTATGAAGGGAGAGCAAGGAGATAAGGGCCAACCAGGGGATCCAGGACGTCCTGCTGACAGGGCAGGACCCCAAGGCTCTAGCGGGCGCCCGGGGGTCAGGGGACCTCCAGGACCTAAAGGAacatGGGCTGAGTTCTTCAAGGGGGCTCCTGGTGGGAGAGGAAGGCCTGGCAATGCAGGCTATAAAGgactgaaagGTGATCATGGGTTGTGTGAATGCACCGTTGTAAACTCTCCACCGGGGCTACCTGGCCCTGCCGGTGACCGCGGTGATGCTGGGATGACCGGAGAGTTTGGTCAGGAGGGTGATTTAGGAGAACCAGGTCCCCAAGGAGATGACGGATTCCCTGGACCTCCTGGGCTCAGTGGTGTGCCGGGCCAAAAAGGTCGGAAAGGCGAACCGAGTGTGGCCTCGCAGAAAGGATATCCTGGAGACCCAGGGGATCGCGGGCGAGATGGTGAGACGGGAGCGTTTGGTGCTCCGGGCCAAAATGGTTTGCCTGGTATCCCTGGGAGCCGAGGTCTTCCAGGAGAAGGTGTCAGAGGAGAACCTGGAGACAAAGGTTTCACAGGTCGGCCTGGTCGACCCGGTGCACCCGGGCTAAGTGGAGAAGAAGGTAAAGTCCTTGGGGGAGTCAAGGGTCAACGTGGTTTACCCGGTGACGATGGCCACGCGGGCTATGATGGAGTTCCAGGAACACCTGGCAGCCCAGGCGGCTGTAGTCCGACAGGAGATGGAGGACAGGTGGATGTAACAGGTCCTTGTGATGCTGTTCCAGGACCTCCGGGGCTGCCTGGACCTCCAGGACCCAGTGGATTACCAGGTCTCCCAGGTCAGCCGGGCCAAAAAGGACCACAGGGCCCACATGGAGCGCatggagagaaaggagaaacaGGAGATCAAGGCATAGGTGGCCGTCATGGACCACCAGGTTTTTCTGGCCCCCGTGGAGACTTGGGGGTTCCTGGCAGCAAAGGTTCAGTAGGAGCCCCTGGTGTGCCCGGTGAGTACGGTCGGTACGGGGCACAAGGTGAGAAGGGTGCTCACGGAGAGATCTTTGGAGCATCACCAGGACCCCCCGGAGACACAGGGCTGCCTGGGCTTCAAGGGAATAAAGGCCTGACCGGTGATCCAGGAGAGCAAGGCTATCCAGGAATGGCCGGCATGCCTGGTATGATTGGCTCCAGGGGTGAGAGGGGCCCTATGGGCCTGCAGGGGGAGGAAGGGAGGCCTGGGCCAGTGGGCAAGTACGGCTACCCTGGTGATCCTGGGCGCGCAGGTCCACCTGGGCTGCGTGGTGGTACCGGACAGCCAGGTTTACCCGGAGAGAGGGGAATTGAAGGAGACCCCGGACCTCCAGGTCCAATTGGATTAAAAGGCAACCCAGGGACCTACGGTAATGATGGTGCCATTGGAGAGCATGGCCCATCAGGTGAAATGGGAAAGCCTGGTGCAGATGGACGCCCAGGACTTCCAGGAATGAAGGgATACAAAGGGTCTTCAGGCATGTCAGGGTTTAAGGGTACCAGGGGCAATGTAGGGGTGAAGGGCTTCAGCGGGTTCAGTGGGGAACCTGGATTGCCGGGCCAAGTTGGCTTAAAAGGAGTGAAGGGTCGAAGTGGAGAGAAAGGTGATCGTGGTTTGAGAGGGGCACCCGGAGACAAGCCTCACATCCCCGCCCAGATGATTGTTGACATGAAGGGAACCAAGGGAGACCAGGGGCATTATGGAAATCAAGGTTTCACCGGGCCGAGAGGTGTTAAGGGTTTGCCCGGTGTGCCAGGCACCGATGGAACCCATGGTCCTCCTGGAAACCCGGGCAATAAGAAAGGTAACCATGGAGACCCAGGAGCAGAGGGGCTGCAGGGGATGAAAGGAATGCCTGGCCTTACTGGAAATCGAGGAATTACGGGTTTTGATGGAATGCCAGGCAACAGGGGAATTAAAGGAAGTCCTGGTGCCTACGGTGCAACAGGAGacaaaggaaggaagggagtcAAAGGTGACACAGGACCGCGCATAGACCTTCCAGGAACCACTGGATTGAGAGGAGAGCATGGTCTTCCTGGAGAGCAAGGCCAGAAAGGATTGATTGGACAACCAGGGGACAGGGGAACACCTGGTTTTGGTGGAATCGATGGAAGAAAGGGAGAGTCAGGTGATCCAGGAATATCAGGGTACCCAGGCTCTGATGGGCAGAAGGGAACTCCTGGTAACCAAGGTCAGAAAGGCTTTCCTGGAACGCCTGGAAAAGATGGACATCCAGGTTTTCCTGGCTTCCCAGGAAACAAAGGGTTTCCCGGCCTGAAGGGTCTTTATGGATTACATGGACTGAAAGGAACAAAGGGTATCCCTGGAACACCAGGTCTGGATACCATTGGACCAGCTGGGGAATCAGGAATCaaaggagagaagggagagggTGGTGACCCCAACAGCCAACCAGGTGCTCCTGGCACAGCGGGTTTAAAAGGCTTCCAGGGACCTCTAGGTGACCACGGTCAACCTGGACCGCCAGGATTACGCGGCCCCGTAGGACCGAACGGGACCCCAGACAGACCAGGACCCAGTGGGGACCCTGGTTATAAAGGACCTAAAGGGTACCAAGGTTTCCCTGGAGCCAAAGGATTTCCTGGTGTGGATGCTCCCCCTGGAGAAAAAGGTGTACCAGGAGTACATGGGTTTCCTGGATTCCCTGGAAGGAAAGGATTTAAAGGAGATCAAGGTTCCTTTGGATACAGGGGGCCAAATGGTGTCTCTGGGAAGAAAGGAGTGAAAGGAGACCAAGGAGTGATGGGAGTTCCTGGTGTTACTGGTGTGAAGGGAGAAAGAGGGCCATCTGGTCCAAAAGGAAACACTGGACCAACAGGCTTTCATGGGATCCCAGGGGACCAGGGTCCTCTTCCAATTCCCATCAGAATTCCAGGAGAGAGAGGCTCTCCAGGTCCGCATGGTATCCAAGGACCAAAGGGGGTCAAAGGGGAAACAGGGCCACAGGGCCCCCCTGGGGATACAGgGTTCATGGGACCCATTGGGCAGAAGGGCATGCCGGGGATTGGTGGTAGATCAGGAACGCCTGGATTTCGTGGAGAGCTTGGACAAATGGGCCACCCCGGTCTGCAAGGCATGGAAGGTCACCGTGGAAACCCTGGTATCCGCGGGTTACCTGGTATGCCGGGCCGCAGCGTCAGTGTGGGTTACTTGCTGGTGAAACACAGTCAATCAGAGCAGACACCTATGTGTCCTGTGGGCATGTCGAAACTGTGGGATGGCTACAGTCTGCTGTACTTCGAGGGCCAGGAAAAGGCCCACAATCAGGATCTTGGTTTGGCTGGCTCCTGCCTCCCACGGTTCAACAGCATGCCCTTCCTGTACTGCAATCCTGGAGACATTTGTTACTATGCCAGCAGAAATGATAAGTCCTACTGGCTGTCTACGACTGCTCCTCTTCCCATGATGCCTGTAGAAGAGGGAGAGATCAAACCGTATATCAGCCGCTGCTCAGTATGCGAAGCTCCATCAGTTGCCATCGCAGTCCACAGTCAGGACATCACCATCCCACAGTGTCCTGCGGGCTGGCGCAGCCTGTGGATCGGCTACTCCTTCCTCATGCACACAGCAGCAGGAAATGAAGGCGGAGGTCAGTCCTTGTCGTCGCCTGGCTCCTGCCTGGAGGACTTCCGCACAACACCATTCATTGAGTGTAACGGGGCCAAAGGCACATGCCACTACTTTGCTAACAAGCACAGCTTCTGGCTAACCTCCATAGATCAGTCGTTCCACACTGAGCCGGCATCAGAGACGCTCAAAGCAGGCCAGCTCCTGTCACGCATCAGCCGCTGCCAAGTCTGCATGAAGAACTTGTGAGAGACTCTACAGCAACGCTGACACAACAAAGTTGTTGCATTAAAATTGGTCTAGTGGCGTCTCTCTATCCATGTACTAAACCAAACAAAGGGGGATCTGACATACTAATTTAGATCAATGTAAATTGGAAACATTCTCCCAGAACCACAGAGCTCAATTATGCAATGACTGTGTGATGCCTTGAGCTTTGAGTGCAATGTCCCGCTGTAGATAAAAACAGGAGAAGCCCCATAATGAGGTCAATAGCATTATGGGAAAACAAgtattttttgtgtttaatgtggatTGGTGCTTACTGTTTAACTTATTACCTCAGCTACGATCACACATTGTTAATGATCAGAGGCCATACACTACAGCTGAACCAAAGACGCCCATGTGTATGCACTGCTTCAGTTTATCtagatgtttttattgtttaggGTATACAGCCCACCATAAAGCCACTAACACTGCTTCTCAGCCGTATGAAGAATGTGTCTTGAACAATTGTGGTTGATACTATTGACAGTATTGTCCTGCTTTTAGTCCATTGCTCTTacaaaaaaccttttttttttatataatccaAGCTTTCAAGCTGTTCGTCCATTATTATGCATTTCTCAACTATTGCGAAAAATCATCTGTAactcttttatttttcaatcaCCATATGTTCACACAATGCACTGATTCTCTTTGTATTTATACCAGCTGAATGAACTTGACCCCCCTCCCTAAGAGTTTAAACATATATCTTTTCTAATACTACTCATGTCACACTCATTTTCCTTTACAAATCTACTAATTATTGAACTGTCCCGAGTTGCCAACACGACAGTCTGTAAACAGCTCGAATCAAAGGTCAAGGTCTGACTGCAGCAAATCCATGCTGTGGTCACTTATCCTGGGATAGATTAGAGAGTTTTACACAATTTAGAAAGTAGGTCAAATGTTCTACATCTCCTAGATTGATTAGACCAGGAATGTACTGACAATTAACTGTAACATAATATTGGTCATTTTTCTTACATGATTATTTCATTGGATTGTAAAGATTAAATGTTTGTTATAG

Function

symbol description
col4a2 Predicted to be an extracellular matrix structural constituent. Predicted to be involved in extracellular matrix organization. Predicted to be located in extracellular region and membrane. Predicted to be part of collagen trimer. Predicted to be active in basement membrane and extracellular space. Is expressed in eye; head; hypodermis; optic fissure; and optic furrow. Human ortholog(s) of this gene implicated in atherosclerosis and porencephaly. Orthologous to human COL4A2 (collagen type IV alpha 2 chain).

NR:

description
PREDICTED: collagen alpha-2(IV) chain

GO: NA

KEGG:

id description
K06237 COL4A; collagen type IV alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039818301.1 True 6247 mRNA 0.54 46 20389518 20471524

Neighbor

gene id symbol gene type direction distance location
tnfsf13b NA coding upstream 240468 20145083 ~ 20149050 (+)
abhd13 abhd13 coding upstream 247019 20137304 ~ 20142499 (+)
si:ch73-390b10.2 LOC102224404,LOC103392127,LOC106959393,LOC103369897,LOC103459619,LOC107099852,LOC100701210 coding upstream 436320 19944868 ~ 19953198 (+)
si:ch211-214p13.8 NA coding upstream 460572 19924998 ~ 19928946 (+)
si:ch211-214p13.9 NA coding upstream 469098 19916092 ~ 19920420 (+)
naxd naxd,LOC102782328 coding downstream 7187 20478711 ~ 20485061 (+)
ing1 ing1 coding downstream 13702 20485226 ~ 20490509 (+)
sik1 LOC103352856,LOC102193135,LOC102291704,LOC101480385 coding downstream 72853 20544377 ~ 20554354 (+)
gabpa gabpa coding downstream 169688 20641212 ~ 20649166 (+)
piga piga coding downstream 227707 20699231 ~ 20706004 (+)
G125577 NA non-coding upstream 58859 20330387 ~ 20330659 (+)
G125547 NA non-coding upstream 120390 20228728 ~ 20269128 (+)
G125504 NA non-coding upstream 361537 20024263 ~ 20027981 (+)
G125501 NA non-coding upstream 373264 20016021 ~ 20016254 (+)
G125482 NA non-coding upstream 446671 19942230 ~ 19942847 (+)
G125626 NA non-coding downstream 20137 20491661 ~ 20492159 (+)
G125662 NA non-coding downstream 122516 20594040 ~ 20631194 (+)
G125668 NA non-coding downstream 132167 20603691 ~ 20611664 (+)
G125675 LOC106940919,LOC102232862,LOC103459816 non-coding downstream 177749 20649273 ~ 20651869 (+)
LOC120570651 NA non-coding downstream 196156 20667680 ~ 20679076 (+)
myo16 myo16,LOC103372229 other upstream 123928 20153855 ~ 20265590 (+)
LOC120569357 LOC103369896,LOC102289365,LOC102197623,LOC101484406 other upstream 396194 19968360 ~ 19993324 (+)
igsf3 LOC103352919,LOC104967650 other upstream 930244 19388015 ~ 19459274 (+)
tmsb4x NA other upstream 1298733 19089418 ~ 19090785 (+)
LOC120570507 NA other upstream 1561971 18818753 ~ 18827547 (+)
G125627 LOC108259060,LOC105016494,LOC108266561,LOC104955100 other downstream 20654 20492178 ~ 20521274 (+)
mpc2b mpc2 other downstream 381565 20853089 ~ 20858916 (+)
G125757 rpl24 other downstream 388628 20860152 ~ 20865442 (+)
sox1a LOC103372296,LOC101481640,LOC100691128 other downstream 1147824 21619348 ~ 21634757 (+)
LOC120569986 LOC103372298,LOC100698342,LOC102199663,LOC102299751,LOC101469554,LOC102782232 other downstream 1183602 21655126 ~ 21691804 (+)

Expression


Co-expression Network