RNA id: TCONS_00067696


Basic Information

Item Value
RNA id TCONS_00067696
length 2412
RNA type mRNA
GC content 0.38
exon number 3
gene id XLOC_034792
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 29015846 ~ 29021757 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAGAAGCATTGTAATATAAGGTACACACTTTGATATAATGAACGCTGCAGCCGGAAATGATCTTTAATCCCACAGTTTTCCCCCCTTTTTAATAATCAGATGTTGCATTCCCCTTCATCCATCAGCCTCAACAGTTGACGACTGGAAGGTGAATGAAGCATCCGAAGAAGCAATGGATGATTCATACTCGACTATTTGTTGAAGTGTTAAAACATTAAGGTGTTCCAGTGTGTGTGATCTTCAGTTCAAAACTCTGGCTGCTCAAACGGAATGCATCTGCTGCTGTTCATTTCAATCTGCCTCAGTCTCTGTTGGTGTGTGCTGAGTGCAGCAGTGACACCTCCATGTAGTGCTGTGTACAGGGGCTTCGCTGAGTGTCTGCTCACTCTGGGTGACAGTGTGAGCTCCAAGACGGATGAAAACCCACAGGACATCAACTCCATTTGCAAGTCATGGGACGCCTTCCAGGTGTGTGTTAGTGGAGTGTTGTCAGGTTGTCGTGGCGATGCAGCAGAAATCTGGGAGTCTTTGAGGGCAGAGTCCCGGAAAACCGCATTTGCAGGGAACCTCTATGATATATGTGCCAGTCGTACTGAAGCTGTGTCTGCAACCACACCCCTGGTTCCCAACACTGATCAAACCAATCAGGAAACCCTCAAAGCACTCGCTCATTCTGTCAGCAAAGACCTGCTCCTGATATGCTGCTCTCTTCTCCTACTGTTTCGGATCTAACTGATCCACACAAATCCGAACTGACGGCAATGTCGGGTCTACAGGCACACATCTGCATAGACTCTTTTTCTTTGAATATGTTCTTTAATTTAGTGTGTGAGTTTACATGAAAGAGATGTGGTGAGACTAATTATGTGTTTGCTtatttgaaaactattttttttctataaaaaacaGTAATGAAAAACGTTGTacacttttaaatatttgtagaTTGTGTAAAAAGATCAGGTAAAACTGTATACATGGTATTTCAAATGTACAATATCTGCAATAAAATTCAAAgcaaagtaatttattttaacattttattaaaatgattaaaataattttaatcaaattatcTATATGGTAGACGTcccatttgttttaaatttaatgtttGTGCTGAAAGGCCATCAGACGCAATATAGTTTAATCCATTCCGTTCAATCATAAAGACTCAGTCCAGTTCCTCAATCAGAACagtctttcttttttctgctgcCTTTGGGACGTCATCTCCTGCCTCTGCCAGACTGATGCCAGACTGTTTGACTGAGTTTCTTGTAGTGGAGACACTGATAAGCTGCTGAGATTGGTCAAGGGCCACAGCGTCTGAATGAGGCCAGGGATACAAACTCCTAACAGCTTCTGACTCTGTGTCAATGCTGGAGATCACCTCAATCTTTGGACGCATCCCACTCTAAAAAATGTAGCATTTAAAAGTAGGAAATTTGCTGAATAATATGGTCACAATTTTTTATCACAACTGTGAAGATGACTTGCTTTCTCACCAAGTGATGTTTTAGTATCATTGAGATACTGTTCTAGTTTTAATCTATAtatgacatttttattcatttgaataTTCAAATCAAACAACTTTAGATTAAGTTAAAGGGGCCGTGTGTAAAATTCCCAGGTGTTTACGGCTTGTAACAAGACATTCTCTGATCTACCTGGTTGTCAATGAAAGCTTGATTTTCTTATATGCAGGACTTTGTATGCTATTGCTAGAAATTAAACAAAGTTACATTTGACTTCATGTGAAGTACTTTTTAATTGATCTATCGTTTTAATAACCTCATCTGTTGAAATGATGCCGGTGAATTGCAAAGCTTGTGCAAACATTTCCACATCACTACgttcatttgttttaatttttacagaTTCTCTCTCACCACTATGTTTTTTTTCGATGTTGTGTTTAGTACAGCTCTCAGCAAAATGGACGATGTTTGAATGTttgttaacagtatattactgtacattattgaagatttttttaattaaagaatgaAACAGAACTTCATGACTACATCAGGGCCTTAAATAATATTCTGTCTCATgtacaatggggtatatgcagagGTAGGGACTTTTAATTTTAGCAAAGCAGCTCAAGTGCTTCTGGTGACCTGGCATGCCTTATAAAATCGCCACATTTAAGATCTGGTTTCTTTAAAATCAGTTATCTTTGTTGCCTGATTGAGATACAATTATAAAATGGGTCTGAGACCAAACAAAATGTACTGAATTTAGTTACACTGTTCTGTGGCATCTCTTTAAAtgatggaaattaattttaccacaTTATTATTAACGCTCCTGCTGCCCCTGAAGGGGCTTGTGTTTAAATGGCTTTTCATATTTTTATCATTGTTACGCAAACTAACAACTAAATAaaagcttaagtct

Function

GO:

id name namespace
GO:0007399 nervous system development biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081022-27 Predicted to be involved in neuron projection extension. Predicted to act upstream of or within nervous system development. Predicted to be located in plasma membrane. Predicted to be anchored component of plasma membrane. Orthologous to human NRN1L (neuritin 1 like).

Ensembl:

ensembl_id ENSDART00000086905

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00067684 lncRNA downstream 510839 28498481 ~ 28505007 (-) False XLOC_034784
TCONS_00067683 lncRNA downstream 545247 28466293 ~ 28470599 (-) False XLOC_034784
TCONS_00069224 lncRNA downstream 552443 28424881 ~ 28463403 (-) True XLOC_034783
TCONS_00069223 lncRNA downstream 627818 28379024 ~ 28388028 (-) True XLOC_034781
TCONS_00069222 lncRNA downstream 2020443 26984945 ~ 26995403 (-) True XLOC_034773
TCONS_00067707 lncRNA upstream 272002 29293759 ~ 29295281 (-) True XLOC_034799
TCONS_00069225 lncRNA upstream 371074 29392831 ~ 29417279 (-) True XLOC_034806
TCONS_00069226 lncRNA upstream 410771 29432528 ~ 29433684 (-) True XLOC_034809
TCONS_00067720 lncRNA upstream 440059 29461816 ~ 29500370 (-) False XLOC_034810
TCONS_00067721 lncRNA upstream 458060 29479817 ~ 29500365 (-) False XLOC_034810
TCONS_00067694 mRNA downstream 319290 28670462 ~ 28696556 (-) True XLOC_034790
TCONS_00067693 mRNA downstream 334122 28668979 ~ 28681724 (-) False XLOC_034790
TCONS_00067692 mRNA downstream 357703 28648706 ~ 28658143 (-) True XLOC_034789
TCONS_00067690 mRNA downstream 367887 28623294 ~ 28647959 (-) False XLOC_034788
TCONS_00067691 mRNA downstream 374324 28626026 ~ 28641522 (-) True XLOC_034788
TCONS_00067697 mRNA upstream 19708 29041465 ~ 29043075 (-) True XLOC_034793
TCONS_00067698 mRNA upstream 87199 29108956 ~ 29115772 (-) True XLOC_034794
TCONS_00067700 mRNA upstream 141835 29163592 ~ 29164818 (-) True XLOC_034796
TCONS_00067701 mRNA upstream 167343 29189100 ~ 29271738 (-) False XLOC_034797
TCONS_00067702 mRNA upstream 167351 29189108 ~ 29200090 (-) False XLOC_034797
TCONS_00067695 other downstream 298287 28709931 ~ 28717559 (-) True XLOC_034791
TCONS_00067689 other downstream 437281 28578449 ~ 28578565 (-) True XLOC_034787
TCONS_00067677 other downstream 735561 28280171 ~ 28280285 (-) True XLOC_034780
TCONS_00067676 other downstream 858178 28157554 ~ 28157668 (-) True XLOC_034779
TCONS_00067650 other downstream 2501886 26513822 ~ 26513960 (-) False XLOC_034763
TCONS_00067699 other upstream 133638 29155395 ~ 29155511 (-) True XLOC_034795
TCONS_00067711 other upstream 315239 29336996 ~ 29337119 (-) True XLOC_034801
TCONS_00067714 other upstream 338231 29359988 ~ 29361366 (-) True XLOC_034803
TCONS_00067715 other upstream 356673 29378430 ~ 29379784 (-) True XLOC_034804
TCONS_00067716 other upstream 368310 29390067 ~ 29391425 (-) True XLOC_034805

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000026_04341911_04342442.mRNA True 671 mRNA 0.45 2 CI01000026 4341677 ~ 4342442 (-)