RNA id: XM_039818006.1


Basic Information

Item Value
RNA id XM_039818006.1
length 2891
RNA type mRNA
GC content 0.45
exon number 10
gene id LOC120569867
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 17238658 ~ 17250149 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGGTTGCGCAACAGCGGAAGTTCTGGGAACCAGGAACTGCAGGAAAAACACACGAAAACACGGCACTTATGGTGATGTTCTGGCGAAGTGCCGCCTGCTAACCAGACTGTACAGCTATCCCACCCTGATAAACACATTCAGGGAAACATGGGAGGCTCTCAAAGCGTCGACATACCGGGTGGAGGAACTGAAGGCTACCACGTCCTCAGAGTGCAAGAGAATTCCCCCGGTCACCGTGCAGGACTGGAGCCATTCTTTGATTTCCTCATTTCCATTTGTGACACTAGACTGAACAAGGACAATGACACCCTAAAAGAGTTGCTGAAGATGAACGTGGAGAAGCCCATCAAGATACTGTTATACAGTAGCAAGACACTAGCAGTGAGGGAGACAACAGTCACACCCAGCACCATGTGGGGTGGCCAGGGGCTTCTGGGAGTCAGCATTCGCTTCTGCAGCTTTGAAGGAGCCaatgaaaatgtttggcatgtCTTGGAAGTGGAACCAAACTCTCCTGCAGCCCTGGCTGGTTTGAGGTCCCACACTGACTACATTATAGGAGCGGACACCGTCATGAATGAGACTGAAGATCTGTTCTCCGTGGTTGAAGCCCATGAAGGGAAGGAGTTGAAGCTGTATGTTtacaacacagatacagacaactGCCGGGAGGTGGTCATCACTCCAAACTGTGACTGGGGTGGAGAGGGCAGTCTAGGATGTGGGATTGGCTATGGCTACCTGCACAGGATACCTATACTGCCATTTGGAGAGGGCAAGAATATCAGTTTCCCTGCACAGACTCCCAGTGAACCAACTAAAGATGGCTTCACAGAGGTCCATCTCTCTGCTGTCATTCCAACGGTGCCAGTTGCTGTGTCTTCTTCTGCTTCGACCGGATTAGAGCAGTCTCTCGCCGGCTTGTCAGTCAGCTCTAACCTGACCGCTGTCGTTAGCAATCTACAGACAGGAGCTCCTACCGTCCCACTGTCCAGTCACAGCCCCTCCTCACAAAGCGCTCCCTTGTCTGTCGATCCTGCTGCCACACTACCAGGTTTAATGCCCTTCCCTGGAGGTCTTCCCCCCTTTCCTCATTTACCAAATCTAAATATCACCTTGCCAGACATGGGCCACGCGTTGCCACCTGGAGTTGGTGGATTACAACATGCAGGTCTTCCACCGCTCACCCAGCCAGGTGTGGTCCCTGGTCTAACTCTGCCTCCGTCTGACTTTGTTCTTCCCCCAGTCACTACTTATGCAGCTCCTGTTGTTACACTGGATACAACATATCCCTTCTCCACTATCCAAATGAACAGTTTACTGACGAGAACCCCTATCCCATCATCAGTGGCCTCTGAATCAATAAATATCACAATGACTGCAGACTCGTCTTAGCAGAGAGCACTGTTTAAGGTGGTCAGTATACTCTCAAGTCTCAACAAAATATAGATGGTCTATTAGCTGCACCACTCAGTTGACAAATTGCTCCTACACACGATTACGATTGTTGTACAAGCTTCAGTATTTCGAGGATACTGAAACCTTGTGCTGGCCTTCTCACACGAAGCGTGAATGTgtgtccagcagcagcagtactgcatcttaaagtgctcattatgctaattttcaggttcataattgtatttagatgttatatcagaataggtttacatggtttaattttcaaaaaacaccatatttttgttgtactacacattgctacagctcctcttttcaccctgtgtgttgagctctctgttttagctacagaatgaggcatctcacttctaacagaagtaaaggctggaccaCAATAGAGCTGTTAGGAgtagtttgtgaacagtgttttctgttggagatgctaagtccctttggggtggactttggactttttcactttgtacacctataacgtgcacaaaaaaaaagatatataacacaataaagaaaagggaaaaatccaaaaagcataatatgagcactttaaagcagcTCGTTGATAGCAGTAGAAGGAAAATTACAAGAAACATTAAAACCTCTCAGCAGAGTTCAAATATTctgaacaatttaaaaaagaaaatagttcatAACTCAAAaataatgccttttttttttagcttggctcaaaaactaaaaatataaaaatgtgtggAAAACCAGTTACTTATACTGTAAGTGTGCACGTCAGTATCTTTGCATTATTTTCAGTGACTAAACTACCACAGAGCCCTTGAAGGGTCACAATGGGAATTATATTTCCTGAACTACTTTTGCAGCCCCTTTCAATATTTTCTGCAGCCCTTCTGATTTACAGGAACTGTTGTGTGTTGGTCTTGTCCAGTTCTAACACAGGGAAATATGCAGATTCTACAAATAGGAGATATAATTGCTAATTTCTACTTTCAATAAGGTCGAGCTCCAACAGTATACTGCCTGGCTGTGGTGGTAACGGCCCAGGTTACGTCATCCTACAGCTACAGTCAAAATCAGTCTCTCTCAATCAGCTTTGGCAGCAAGCGTTGGGAGCTAGGTCAACTAGCTCTACTAGATATATATCCAGCTGCAATGATACCGACCTGTACCTGAGCTACACACAGCTGAGGGTGCACACACAGAACCAGCGTGGTCTACTACAGAATACTATATTCACAATACAGCTCAGcctctcaacaaaaaaaataatcccaCAGTGACCTTTCAGTGGCTCTGTAAACTACTGAAGGTCTTCAGGGGAACGAGAGGTAGTTCTACTATTGGGGATTTTCCTTTAGAAAAGCAGTTTGTGCAGTTTGCTTGCTGCAgccattaaaaatataaaacttctgattttgtgaaaaacaaaaatttgTAAAGTGATCGTTACCTTGATTAAACTGATTTTCTATCTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641083.1 lncRNA upstream 226746 17010145 ~ 17011912 (+) True LOC120570569
XR_005641084.1 lncRNA upstream 230150 17006585 ~ 17008508 (+) True LOC120570570
TU167450 lncRNA upstream 280744 16956725 ~ 16957914 (+) True G124524
TU167326 lncRNA upstream 534729 16703371 ~ 16703929 (+) True G124430
TU167600 lncRNA downstream 6693 17256842 ~ 17257502 (+) True G124627
TU167604 lncRNA downstream 11588 17261737 ~ 17262826 (+) True G124631
TU167648 lncRNA downstream 187212 17437361 ~ 17437819 (+) True G124661
TU167662 lncRNA downstream 219599 17469748 ~ 17498759 (+) True G124671
XR_005640894.1 lncRNA downstream 354996 17605145 ~ 17614067 (+) True LOC120569550
XM_039818881.1 mRNA upstream 10360 17212464 ~ 17228298 (+) True LOC120570497
XM_039818882.1 mRNA upstream 10360 17216089 ~ 17228298 (+) False LOC120570497
XM_039817126.1 mRNA upstream 34402 17201428 ~ 17204256 (+) True sp5a
XM_039818238.1 mRNA upstream 40068 17127922 ~ 17198590 (+) False myo3b
XM_039818210.1 mRNA downstream 27646 17277795 ~ 17284777 (+) True dcaf17
XM_039818211.1 mRNA downstream 27646 17277795 ~ 17284777 (+) False dcaf17
XM_039818214.1 mRNA downstream 35269 17285418 ~ 17287800 (+) False LOC120569990
XM_039818213.1 mRNA downstream 35271 17285420 ~ 17287800 (+) True LOC120569990
XM_039817856.1 mRNA downstream 37965 17288114 ~ 17305093 (+) True dync1i2a
XR_005641003.1 other upstream 61018 17127881 ~ 17177640 (+) False myo3b
TU167490 other upstream 239126 16997781 ~ 16999532 (+) False col28a2a
TU167128 other upstream 1137047 16099271 ~ 16101611 (+) False dap1b
XR_005640926.1 other upstream 2082772 15138477 ~ 15155886 (+) False trpm2
TU166397 other upstream 3004588 14233332 ~ 14234070 (+) True G123742
XR_005640989.1 other downstream 610011 17860160 ~ 17880726 (+) False hoxd10a
XR_005640990.1 other downstream 610604 17860753 ~ 17880726 (+) False hoxd10a
XR_005640988.1 other downstream 610723 17860872 ~ 17880726 (+) False hoxd10a
XR_005640963.1 other downstream 760608 18010757 ~ 18017413 (+) False hnrnpa3
TU168229 other downstream 1452879 18703028 ~ 18704528 (+) True G125079

Expression Profile