RNA id: TU191127


Basic Information

Item Value
RNA id TU191127
length 1559
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G141688
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 6577177 ~ 6578755 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttttttttttattgaaatatgaACTTTATTTCACccatacaaaataaaaagaatgttAAAAGTTTACAATACAGTGTCAACTTCAACTGCCCATTTGGAAACATTTCATACTAAGACTGACACGTAAATGGGAGCCCCATCTCTGTTTTTAATTggatacatttaaaacaatctAAAAGGGGAGGCGGAGGCGGAggtgaggggggtgggggggctatGTTAAAGATAAAGGAGAAAGTTACTCAAAATTGGAGGGGTGGCCAGAATCGAAACGAGAGGACAAAGGAGAtaaacaactttaaaaacaaagttaTGGTCCAAGAGTCACAGTATACTTCTGATTGGCAATTCAGGGGTAAATTTAAtggtcgtaaaaaaaaaaaataaaaaaattaataatcatGTACAAGGTCCAACTGCCAGAGCACCTAACCTCTGACAgcgtaaaaaacaacaaacttaaaaaataaaaaaaataatcgttaaCCTGCTGATATGGTTGACTTTTTCCATAGTTCTCTTGATAAAAACGGGAATTAAAAATAGAAACCAATTCCAAAAAAAAGCTGTGGTTAGCTAAactatagtaaaaaaaataaaaataaatacacctgCTTCCTCGTTTACGTTACGGCCCGACCATTGGACCGACCAGCAAGTTGTGACAAAGCCGGGAAGTAGGGCTCACAACTTAACAGCCATATTTCATAGCCAATCAATAACATGGTAATAAAACACTTTGAGGGTGAGACGATGACCTCCTTTGCCTTCCACGAGTGCTGATCACCTTCCAAATACTTCTCTGTTGCCCTGAGCTCATTAGTTGGgttggagttatttttttttttttttgcctgtgtATGAGCATCAAAGGCTATAATTAGGCTTTAATTACCACTTATAGATTTGGTTTTTTCTTCCACAGCCAACATTGAGTGACTAATTGGTTCACTTCATAATTTCTACTACAGGAGGATTGAGGAAGTAAAAGAAAAGTGCCAAAAGAAAAAGCTACAAGGCAACACAAACCACACCTATCCTGTCTGCGGGggggcaaaaaaagaaaaaacagcgaCGACTGCCATTTTTAATAGTCAAAATAAAACGActgactttttaaaaaacatcctTCTTGGATTTCTTctctacaataaaataaaacctttaaaaaaaaaaaaaaaaacacataatataCAACCAGATTTCGGTGTCCTGCGGCGGTGTGTCTTCCAGCCGGCTGCCGAGGGCTTAGCTGTCAGAAGGCTGCGCTGAAGAGTCTTTCCCTCCTCTGCTCAGAGCAGCTGCCGCGACAACAACTCAAGAAACTAAGAAAATaatgttgaaagtgtgtgtgtgtgagagagagagtgtagtggaggaggagggagctAGGAGTCATAGTCTTCGTCGTCCTCGTCCTCGTTCCGGTGCGGCTCGGGGGCTGGGGGCGGTGGTGCGACGCTAATcatggaggggtggggggcgaAGGCCATGCCGCCCTGGGGCTGTGCGGGAGCCATGCTGCCCATGTGCATGTACTGGGGGGGCGCGTTTGAGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191105 lncRNA downstream 65182 6455939 ~ 6511995 (-) True G141667
TU191049 lncRNA downstream 198805 6375998 ~ 6378372 (-) False tbc1d14
TU191040 lncRNA downstream 267282 6308898 ~ 6309895 (-) False sox19b
TU191020 lncRNA downstream 310594 6266151 ~ 6266583 (-) True G141613
TU191019 lncRNA downstream 311152 6265440 ~ 6266025 (-) True G141612
TU191192 lncRNA upstream 816404 7395159 ~ 7462473 (-) True G141741
TU191226 lncRNA upstream 939510 7518265 ~ 7518467 (-) True G141773
TU191227 lncRNA upstream 939754 7518509 ~ 7518757 (-) True G141774
TU191231 lncRNA upstream 942458 7521213 ~ 7521793 (-) True G141778
TU191234 lncRNA upstream 980057 7558812 ~ 7559174 (-) True G141781
XM_039822067.1 mRNA downstream 7981 6566570 ~ 6569196 (-) True c14h11orf68
XM_039821832.1 mRNA downstream 30594 6514880 ~ 6546583 (-) True LOC120572494
XM_039823558.1 mRNA downstream 86951 6456007 ~ 6490226 (-) True LOC120573666
XM_039823557.1 mRNA downstream 95183 6456007 ~ 6481994 (-) False LOC120573666
XM_039823559.1 mRNA downstream 107644 6456007 ~ 6469533 (-) False LOC120573666
XM_039823326.1 mRNA upstream 77201 6655956 ~ 6657450 (-) True LOC120573537
XM_039821634.1 mRNA upstream 146516 6725271 ~ 7395078 (-) False nrxn2b
XM_039821632.1 mRNA upstream 146516 6725271 ~ 7395078 (-) False nrxn2b
XM_039821630.1 mRNA upstream 146516 6725271 ~ 7395078 (-) False nrxn2b
XM_039821636.1 mRNA upstream 146516 6725271 ~ 7395078 (-) False nrxn2b
TU191048 other downstream 206084 6353464 ~ 6371093 (-) True LOC120572256
TU191047 other downstream 206084 6369698 ~ 6371093 (-) False LOC120572256
XR_005641775.1 other downstream 240418 6336621 ~ 6336759 (-) True LOC120573735
XR_005641774.1 other downstream 241545 6335494 ~ 6335632 (-) True LOC120573734
XR_005641401.1 other downstream 350371 6221971 ~ 6226806 (-) False LOC120572220
TU191399 other upstream 1203189 7781944 ~ 7787595 (-) False fcer1g
unassigned_transcript_685 other upstream 1258466 7837221 ~ 7837294 (-) True trnar-ucu_15
TU191428 other upstream 1404182 7982937 ~ 7985950 (-) True G141913
XR_005641432.1 other upstream 1528892 8107647 ~ 8112684 (-) True LOC120572400
XR_005641433.1 other upstream 1528892 8107647 ~ 8111920 (-) False LOC120572400

Expression Profile