RNA id: TU192448


Basic Information

Item Value
RNA id TU192448
length 1764
lncRNA type sense_over
GC content 0.48
exon number 3
gene id G142669
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 10930022 ~ 11144738 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cgcacacacacacacacacacacacacacacacacacacagttacatacTCCAAATACactttgtttgcttgtttttgcTCTTTGGGAACACAGCAGAgagcaattgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtaggggaggGGGGAGGTCAGGGTTGACATTCTGGATATGAAGGCGTGATGCCAACAGAAATGAtcccaacataaaaaaaaaaaagtacaaatagaTCATTTTTAGCATTTATGTGctgacaacaaaaacaaaccccaAATTTAAATTCTACaaagaaaggcaacataaaAATCCATCAACAACCCCGTCCGCAAACTGTCCTCCCCTCCCTAGTTTCCCATACACCCCTCTTTTCCAGTGCACAACTCTTTTTTAAAAGCCATAAAAGAAGAagctaaataataaaaaataaaaacttaaaaacaaaagtagGGACTTGAAGCCAGGTTGAGGCCCGTACAACTGATGTCGTCATCGAGGCGAACCGGACTCCTGGGACTTGATGGCGTGAGAGAAATTTAAAAATGACGAAGAAAAAGGGAGTGACGAAGTGAAAAAGATGGATGTGTTTGTGCTGAGTTCAGTTTGCAATTAGAGGGAGAGAGGGtggtgtacagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagaagtccTGGCTCAGTTGGAGTCCATTCAGTTTTGGAGGAGAATCACAACAAATGTAATCAAAACTCCTTTGAGTTTTCCAGCAAAAAAGGCTCTGAACTTTCTGTCAATCATCACCACTTAGTTGAGAGTTTTAGGGAGAAAGTAGCAATTCCTCCactctctctttgtcctccatccatccctattttttatttattttttgttaaccTGGTTTCCCTCCTACCCAAAAAGACCTGGCAGCAGAACCGTGCAGAAAAACGGAATAAATAGCAGGAAGATGTGACATGAGTGGTCAAAGTGATCAAAGTGTGACTACTaaaaacagagagagcagaTCGGACATGCAGAAGAGTGGAACGTCTAGTAGaacgtgacaaaaaaaacaaacaaataaaacagcaGGGAAGAGAGAAGACCTCGGTCTATAAGTACTTCACAACTCAGAGGAAATGGACTCAGAGTTTCTAATGGCAGGGCCTGGTGAACTTTAGGAACAGAACTCCTAGAAAAAGAAACGTTTTCTAGTCTCAGAGAACCAACAGCCCTACTTCAGACCTTTGTCCACATAACAATCGTGTTCCCGCCCTGTAGCTTACCTCCACAGTGCCCCCAACCCCGCttacagcatcatcatcatcctcctcctcctcaccatcACCCCCCCTTCACCCGCCCACCTCCGCCCTTTAATCTCATCTCTCCTCGCTGCTCCTCGGCCCTCACAGTTTGAGCTCGTTGGCAATCTTTGAGGCAATGTTCTTGAAGGCGATGGACGTGCCTGAGATGCGTTTGAAGCGCACGCCGTTGAGGGAGAGCCGCGGCAGCTTGCACACCTCCATCTCCCACTGGACGAAGTCGTCGCGCGCTGGGTTGCCCGACACGCACAGCAGCATGTAGCGCTCGCGCATCTCGTACTCGCAGCTGTTGGAGTCGAGCACCTTGCGGATCTCGCGCATCATCTCCATGGGCTCCATGGACGACGTGGTCTTCATGGACCAGGTGAAGCGAAGCGAGCGCGGCTTGGCCGAGTCCTTCTGGGTGCCGATGGCAGGAGGGGTGCCGGTGCCAcctgaggggggaggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192488 lncRNA downstream 18000 10938475 ~ 10993801 (-) True G142690
TU192484 lncRNA downstream 75630 10907927 ~ 10936171 (-) False G142687
TU192481 lncRNA downstream 75630 10929310 ~ 10936171 (-) True G142687
TU192482 lncRNA downstream 75630 10933222 ~ 10936171 (-) False G142687
TU192471 lncRNA downstream 122656 10887762 ~ 10889145 (-) True G142678
TU192534 lncRNA upstream 133169 11167889 ~ 11172990 (-) True G142730
TU192535 lncRNA upstream 133169 11167889 ~ 11172990 (-) False G142730
TU192547 lncRNA upstream 295307 11330027 ~ 11331501 (-) True G142739
TU192554 lncRNA upstream 375198 11409918 ~ 11433847 (-) True G142744
TU192553 lncRNA upstream 376035 11410755 ~ 11433847 (-) False G142744
XM_039822702.1 mRNA downstream 92670 10904424 ~ 10919131 (-) True hspa12b
XM_039823475.1 mRNA downstream 127290 10869920 ~ 10884511 (-) False dok1b
XM_039823474.1 mRNA downstream 127290 10869920 ~ 10884511 (-) True dok1b
XM_039821833.1 mRNA downstream 235612 10711125 ~ 10776189 (-) True sema4f
XM_039823578.1 mRNA downstream 328199 10675440 ~ 10683602 (-) True syt4
XM_039821829.1 mRNA upstream 42754 11077474 ~ 11080073 (-) True arl2
XM_039821836.1 mRNA upstream 115131 11149851 ~ 11154529 (-) True gpha2
XM_039821562.1 mRNA upstream 123503 11158223 ~ 11167291 (-) False LOC120572301
XM_039821560.1 mRNA upstream 123503 11158223 ~ 11167291 (-) False LOC120572301
XM_039821559.1 mRNA upstream 123503 11158223 ~ 11167291 (-) False LOC120572301
unassigned_transcript_689 other downstream 175599 10836131 ~ 10836202 (-) True trnaa-cgc_3
unassigned_transcript_688 other downstream 184247 10827483 ~ 10827554 (-) True trnaa-cgc_2
unassigned_transcript_687 other downstream 184948 10826782 ~ 10826853 (-) True trnaa-cgc_1
TU192182 other downstream 378353 10631475 ~ 10633448 (-) False si:dkey-183c6.7
XR_005641776.1 other downstream 476507 10535104 ~ 10535294 (-) True LOC120573736
TU192451 other upstream 66468 11101188 ~ 11144738 (-) False G142669
TU192526 other upstream 115288 11150008 ~ 11153750 (-) False gpha2
TU192555 other upstream 407241 11441961 ~ 11443939 (-) False G142745
TU192556 other upstream 407241 11441961 ~ 11443939 (-) True G142745
unassigned_transcript_694 other upstream 440542 11475262 ~ 11475343 (-) True trnal-aag_8

Expression Profile