RNA id: TU199858


Basic Information

Item Value
RNA id TU199858
length 1232
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G147858
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 31277910 ~ 31279210 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTTCTCCTTTATCTCCGCTGAAGAGAAGCGTGGATCGGTTAGCCACAACCAGAACAGGAGGAAAACAACCGCTGACACCAGAGTTTATTGATCCTGCACAGAAACAAGctcaaaaatacaatataaatatcAGTAAATAGTTATTATCATTAAACTCTGTTCAGTAGATATTTGCTGGTTGTTGTGCAATGTATGAAACACTTAGAGAGGAACACATGTATGACTTACATAAGAAGCATTTTTTTGAACACATCGAAACACATCTAAAGAATGCAAACATGCTTAAAATGTGagttgtttgtctctttgtagctgcattaacatcaatcaacatttattcataaAGTGCTTCACAGCAACCAACAGGTATCCAATGTGCTTGAAGGaccaagaataaaaaaatgtaccatacaataaaaaagagtaaaacataaaatacagtCAAATCTAAAACTGTTGCATATAAACAGGAGACAGAAAGGGAAAATGCTGCAACACTACTGTGcattaaaagccattctaaataaAGAAGTTTTAAGTTTGGATTTCAAAAGAGAGTTAGGGGGTCTGTAATGGTGTGAATGCCAGGTGGTAACTTGTTCCAAAatctcggggcagcaactgcaaaagagTGACCCCCCCACAGTTTGGGGAgcatgcctatgttcccacagtccaatggtcccacaggtctatgttcccacatttttaagttttttttttttcaaaattaggccctatgtttccacagttcccacatttctaagatttttttccaaaattacccacatttccttttttataaaTACGTATCAGATTGTATCctcctttctcccaatttggtagccaattacacccaacctattatccagtagcaatggactacagatggaatgtagcTTTTAGCTAAATCTGGTGCGCCCATCTCTTTGTTTATTGCAAacataaccctaaccttaattttaagaaaaatcttagaaatgtgggaatataGGGCTGACCGCACAGTTTGTACCTCgaccttgggacttctaaaGCCAGTTGATTGGATGACTGGACTGACCTTTTTGTGCTTGCAAAGGTTTAAAATCTCCGACAAATACACCAGGGCTatgtagatgtagatgtgaGGGTCTCTGGGGACCAGTGATTGGCCGTCTGGACTCCACTGGTTGGTGTTCAGGTCTTCCTCACTGAGGCGTAGAGGACCTCTGGGTCTGCTGGAGGCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199854 lncRNA upstream 10095 31266779 ~ 31267815 (+) True G147854
XR_005641583.1 lncRNA upstream 79260 31197274 ~ 31198650 (+) True LOC120573009
TU199836 lncRNA upstream 82630 31185420 ~ 31195280 (+) True G147838
XR_005641554.1 lncRNA upstream 83931 31192351 ~ 31193979 (+) True LOC120572981
TU199835 lncRNA upstream 112343 31165248 ~ 31165567 (+) True G147837
TU199870 lncRNA downstream 29776 31308986 ~ 31309321 (+) True G147870
TU199872 lncRNA downstream 41442 31320652 ~ 31323281 (+) True G147872
XR_005641579.1 lncRNA downstream 61278 31340488 ~ 31350109 (+) True LOC120573004
TU199922 lncRNA downstream 116225 31395435 ~ 31401133 (+) True G147919
TU199956 lncRNA downstream 156640 31435850 ~ 31468286 (+) False G147932
XM_039822300.1 mRNA upstream 98226 31129731 ~ 31179684 (+) True LOC120572828
XM_039822428.1 mRNA upstream 159656 31115360 ~ 31118254 (+) False LOC120572908
XM_039822302.1 mRNA upstream 170632 31083934 ~ 31107278 (+) True LOC120572830
XM_039821927.1 mRNA upstream 180184 31084835 ~ 31097726 (+) True LOC120572605
XM_039821925.1 mRNA upstream 207942 31065627 ~ 31069968 (+) True LOC120572604
XM_039822463.1 mRNA downstream 201478 31480688 ~ 31487987 (+) True LOC120572933
XM_039822464.1 mRNA downstream 201478 31480688 ~ 31487987 (+) False LOC120572933
XM_039822217.1 mRNA downstream 245040 31524250 ~ 31538893 (+) True LOC120572782
XM_039822362.1 mRNA downstream 423852 31703062 ~ 31717353 (+) False LOC120572858
XM_039822364.1 mRNA downstream 423852 31703062 ~ 31715682 (+) True LOC120572858
TU199826 other upstream 50782 31226709 ~ 31227128 (+) True G147831
TU199822 other upstream 159620 31116762 ~ 31118290 (+) True LOC120572908
XR_005641510.1 other upstream 159923 31116490 ~ 31117987 (+) False LOC120572908
XR_005641509.1 other upstream 160443 31116499 ~ 31117467 (+) False LOC120572908
TU199831 other upstream 188833 31084610 ~ 31089077 (+) False LOC120572605
XR_005641514.1 other downstream 199983 31479193 ~ 31480480 (+) False LOC120572933
XR_005641511.1 other downstream 199991 31479201 ~ 31487987 (+) False LOC120572933
XR_005641512.1 other downstream 201478 31480688 ~ 31487987 (+) False LOC120572933
XR_005641513.1 other downstream 201478 31480688 ~ 31487987 (+) False LOC120572933
TU200015 other downstream 423659 31702869 ~ 31836873 (+) True G147982

Expression Profile