RNA id: XR_005641511.1


Basic Information

Item Value
RNA id XR_005641511.1
length 903
RNA type transcript
GC content 0.44
exon number 4
gene id LOC120572933
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 31479193 ~ 31487987 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATCACATTCATCCGTCCGCAGGTTAGAGAGCCAGCAGtTGTGATGGAGGTACCAGTGCGCCTTGGAGATGATGTCATTCTACCATGTCAGGCTGCTGATCCCTCCATCTGCCATGTAGAGTGGACCAGAGCTGACCTGAAGCCAGATACCATCCTCTCATACAGAGTTGAAGGGTCGGTTCTAACCATCCTGCATCCTAAATATAAGGAGGACAAGGTGGAGCTGGTGGAAAAAGATCTGAAGAAAGGAAACATGTCCTTAGTTCTGAAGAATGTTAGCACCACTGACCAAGGAACATACAAGTGTCGAGTAACATCAGGTGGTTCAATGAGGACTAATACTACCGTCCTCCCCTggaaaacaatcacaatcatccGTCTGCAGGTTACAGAGCCAGCAGacaagagTGTAGAAAATAATGAAACCGATGATCAAGGAAGTACACAGTGATCCGTCTGCAGGTTACAGATCCAGCAGGTCCCCTGAGGATAGAAACTCCTCTCCTGTAGTCTGATACGGAGGACTGGCAGCAGGTTTTCCAGTTGGACAGATTATTGTAGTTGTTGCAGTGGATGTTTTCCTGATATATAAAAGACGTAAGAAGAAGAGATCAGGACTGCCTGCAGATGATGCTGATAAAGCTTTTTTCCGCCATGAATCTCCACCTTACTGTGGTTGGGGGTTGTGTACCCGAGGAGTCTGGGATCTGTATCACCTGGAGCTCTGAGATCCTGTAGGTTGTCCCATGATGAGTTGGTCTCAGACTCATAGTAAATCAGTTCAAATAAACTTAACCTTTAGAGAAGTAAATGTTTTactactgaagtaaaagtaatgttgctttaaagaaaaagaaaagtgacgtaacttaaattacttttactttcaatacattttcttcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199956 lncRNA upstream 10915 31435850 ~ 31468286 (+) False G147932
TU199955 lncRNA upstream 10915 31458088 ~ 31468286 (+) True G147932
TU199922 lncRNA upstream 78068 31395435 ~ 31401133 (+) True G147919
XR_005641579.1 lncRNA upstream 129092 31340488 ~ 31350109 (+) True LOC120573004
TU199872 lncRNA upstream 155920 31320652 ~ 31323281 (+) True G147872
TU199989 lncRNA downstream 92145 31580132 ~ 31735713 (+) False G147963
TU199998 lncRNA downstream 112571 31600558 ~ 31604328 (+) True G147968
XR_005641590.1 lncRNA downstream 199074 31687061 ~ 31688389 (+) True LOC120573016
TU199990 lncRNA downstream 247150 31735137 ~ 31737438 (+) True G147963
XR_005641623.1 lncRNA downstream 277488 31765475 ~ 31767761 (+) True LOC120573052
XM_039822300.1 mRNA upstream 299517 31129731 ~ 31179684 (+) True LOC120572828
XM_039822428.1 mRNA upstream 360947 31115360 ~ 31118254 (+) False LOC120572908
XM_039822302.1 mRNA upstream 371923 31083934 ~ 31107278 (+) True LOC120572830
XM_039821927.1 mRNA upstream 381475 31084835 ~ 31097726 (+) True LOC120572605
XM_039821925.1 mRNA upstream 409233 31065627 ~ 31069968 (+) True LOC120572604
XM_039822217.1 mRNA downstream 36263 31524250 ~ 31538893 (+) True LOC120572782
XM_039822362.1 mRNA downstream 215075 31703062 ~ 31717353 (+) False LOC120572858
XM_039822364.1 mRNA downstream 215075 31703062 ~ 31715682 (+) True LOC120572858
XM_039822363.1 mRNA downstream 215075 31703062 ~ 31715682 (+) False LOC120572858
XM_039822366.1 mRNA downstream 215075 31703062 ~ 31715682 (+) False LOC120572858
TU199826 other upstream 252073 31226709 ~ 31227128 (+) True G147831
TU199822 other upstream 360911 31116762 ~ 31118290 (+) True LOC120572908
XR_005641510.1 other upstream 361214 31116490 ~ 31117987 (+) False LOC120572908
XR_005641509.1 other upstream 361734 31116499 ~ 31117467 (+) False LOC120572908
TU199831 other upstream 390124 31084610 ~ 31089077 (+) False LOC120572605
TU200015 other downstream 214882 31702869 ~ 31836873 (+) True G147982
TU200151 other downstream 1134907 32622894 ~ 32698317 (+) False G148079
TU199900 other downstream 1215761 32703748 ~ 32720876 (+) True LOC120572879
TU199912 other downstream 1460427 32948414 ~ 32951917 (+) False LOC120572610
TU200253 other downstream 1751112 33239099 ~ 33285193 (+) False G148151

Expression Profile