RNA id: TU201577



Basic Information


Item Value
RNA id TU201577
length 780
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id LOC120573015
representative False

Chromosome Information


Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 34838036 ~ 34842276 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TTTCACCAACAGTTAGGATGGAGGACACATCTCTACTCTGGCTGCTCTcctctctgactgtgagtccAGGATAGTCTGTCTTCCGCTGATTCTCTCTACAGAGAAACCTACGACCATAAACCCTACTTCGAGCTCTCTGCCGCCCCCTGACACCTCAGCTCCGCCCCCAGCTTCAGACCGCCTCCACCTTGTGTTCAGACTGGTCTGCCACCTGGTGGTGTTCTGTCCGTACTGCATCTCCACTTTCATCATGGTGTCTTTATATAGTCAGAGGGCCACAGGAAATGACCTGCCTGTCTCCGTGGTGATGACCCCACTCAACCAGGCTGAGACGGGATTGGACGAAGACTATGATGATGTCACCACGGAGCATCACTTCTGAACTGATCTGAGAAGAAGCTCAAATGTTTCAAGTCCTCATAAATCAGAAAGAGTGGCAGCCTCAGAACTCTTCCCTGTGGATCTCCACATGTTCTAGTTTTAAAATTCTGCCAACAGCTGACAGTTTgaaacatagaaataaaatggatcaTTTCATTTCTATAGTTTGCAGCTGATTTGACCGTACCAAAACCAGCCTCTGAAAACGtaaccagctgagtcgcagcgacaCCATCAGCTTGTTTTAGTCGAGCTGAAACGGGCCGCTTCAGAAGTAAAGGTTTCTTCTCGTTGCCCTCTTTGCTCTGAACTGGACTTTAGTAGCAGATAGTTGTTCAGGTTCTGCTGTAAGTCGTGTTGTTGGTCATGTCTGTTTAGATGTCAAGTTTTTAATCTCTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU201552 lncRNA downstream 106566 34723961 ~ 34731597 (-) True G149044
XR_005641593.1 lncRNA downstream 266156 34570437 ~ 34572007 (-) True LOC120573019
TU201505 lncRNA downstream 277906 34557602 ~ 34560257 (-) True G149005
TU201501 lncRNA downstream 283641 34554008 ~ 34554522 (-) True G149001
TU201458 lncRNA downstream 393029 34436011 ~ 34445134 (-) True G148964
XR_005641563.1 lncRNA upstream 47921 34890197 ~ 34890807 (-) True LOC120572990
TU201909 lncRNA upstream 322260 35164536 ~ 35165076 (-) True G149311
TU201930 lncRNA upstream 394810 35237086 ~ 35237753 (-) True G149328
XR_005641576.1 lncRNA upstream 396523 35238799 ~ 35239298 (-) True LOC120573001
TU201941 lncRNA upstream 484666 35326942 ~ 35329195 (-) True G149339
XM_039822235.1 mRNA downstream 70277 34678211 ~ 34767886 (-) False LOC120572793
XM_039821947.1 mRNA downstream 88745 34728723 ~ 34749418 (-) True LOC120572626
XM_039822236.1 mRNA downstream 88752 34678211 ~ 34749411 (-) True LOC120572793
XM_039822234.1 mRNA downstream 116195 34678211 ~ 34721968 (-) False LOC120572793
XM_039822238.1 mRNA downstream 116196 34678211 ~ 34721967 (-) False LOC120572793
XM_039822331.1 mRNA upstream 10065 34852341 ~ 34860919 (-) False LOC120572844
XM_039822332.1 mRNA upstream 10065 34852341 ~ 34859313 (-) False LOC120572844
XM_039822330.1 mRNA upstream 10065 34852341 ~ 34858116 (-) True LOC120572844
XM_039822226.1 mRNA upstream 64691 34906967 ~ 34925868 (-) True LOC120572788
XM_039821950.1 mRNA upstream 139112 34981388 ~ 34986204 (-) True LOC120572628
TU201571 other downstream 6785 34824648 ~ 34831378 (-) True G149062
TU201452 other downstream 418251 34413280 ~ 34419912 (-) False LOC120572624
TU201453 other downstream 418251 34413280 ~ 34419912 (-) True LOC120572624
XR_005641508.1 other downstream 484725 34352032 ~ 34353438 (-) False LOC120572901
XR_005641496.1 other downstream 662118 34165127 ~ 34176045 (-) False LOC120572812
TU201582 other upstream 12832 34855108 ~ 34860914 (-) False LOC120572844
TU201870 other upstream 203649 35045925 ~ 35049559 (-) True G149285
TU201906 other upstream 312806 35155082 ~ 35162119 (-) True G149309
TU201961 other upstream 529494 35371770 ~ 35428656 (-) False G149349
TU202054 other upstream 823381 35665657 ~ 35666244 (-) True G149408

Expression Profile