RNA id: XM_039821950.1


Basic Information

Item Value
RNA id XM_039821950.1
length 788
RNA type mRNA
GC content 0.53
exon number 6
gene id LOC120572628
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 34981388 ~ 34986204 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGCAGACTACTACAACGAGAGGGAACAGGACAGCAGCACTCTCTGGATCAAAGACACGAAGACATGGAATCGTCTGTGGTCTGTGGAGCAGAGTGTCAGCAACCTGAGCCACGTCATCCAATCACTGAACACCTCTCTGCAGCACGCTcaggAAACATCTAAGCAGGTTCACCAGCTGCAGGTTGCTatggacaacaacaaaaacgagCTCATGTCAGgctcTGCAGAGAGCATGTGTTGTCCTCCAGGTTGGGATGAGTTTGGTTCCAGCTGCTACTTCTTCAGCCGTGACTCTCGGTCCTGGAACGAGTCCAGAGTCTGGTGTGAGAAACGCAACGCTCACCTGCTCATACTGCAGGACGACAAGACCTGGgaCTTTGTGACTCGTCGTGCGGTTCCCCTGGTGTACTGGGTGGGTCTGTCTGACTGGAGAACCGGCCGCTGGGAGTGGATCAACCAGACACCGTACACCATGGAGCGCAGGCGCTGGGAGCCCGGTCAGCCTGACAGCTGGACCGATCACGGTCTCGGCCCCGGAGACGAAGACTGTGCTCAACTGTATTACACTGGACGCCTCAACGACATCCACTGCTCCACCGCCATGCGCTACATCTGCCAGAAACACGGCACGCACGCCTGAACAACATCTGGAACCCAAACACCAACAAGCCATTACAACCCTCGTCAGCAGCGACAGGAAACGCATCATCGATCGGAAACTCAACATCAGTGATTCAAGAAaacaaagtcaaaatattttaataaaaacaaatcaggaAAGGCAGT

Function

GO:

id name namespace
GO:0004982 N-formyl peptide receptor activity molecular_function

KEGG:

id description
ko04064 NF-kappa B signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641563.1 lncRNA downstream 90581 34890197 ~ 34890807 (-) True LOC120572990
TU201577 lncRNA downstream 139112 34838163 ~ 34842276 (-) False LOC120573015
XR_005641589.1 lncRNA downstream 139871 34838036 ~ 34841517 (-) True LOC120573015
TU201552 lncRNA downstream 249791 34723961 ~ 34731597 (-) True G149044
XR_005641593.1 lncRNA downstream 409381 34570437 ~ 34572007 (-) True LOC120573019
TU201909 lncRNA upstream 178332 35164536 ~ 35165076 (-) True G149311
TU201930 lncRNA upstream 250882 35237086 ~ 35237753 (-) True G149328
XR_005641576.1 lncRNA upstream 252595 35238799 ~ 35239298 (-) True LOC120573001
TU201941 lncRNA upstream 340738 35326942 ~ 35329195 (-) True G149339
XR_005641537.1 lncRNA upstream 363986 35350190 ~ 35350990 (-) True LOC120572968
XM_039822226.1 mRNA downstream 55520 34906967 ~ 34925868 (-) True LOC120572788
XM_039822331.1 mRNA downstream 120469 34852341 ~ 34860919 (-) False LOC120572844
XM_039822332.1 mRNA downstream 122075 34852341 ~ 34859313 (-) False LOC120572844
XM_039822330.1 mRNA downstream 123272 34852341 ~ 34858116 (-) True LOC120572844
XM_039821947.1 mRNA downstream 231970 34728723 ~ 34749418 (-) True LOC120572626
XM_039822445.1 mRNA upstream 59749 35045953 ~ 35046622 (-) True LOC120572922
XM_039822479.1 mRNA upstream 62715 35048919 ~ 35049557 (-) True LOC120572945
XM_039821953.1 mRNA upstream 194121 35180325 ~ 35194259 (-) True LOC120572632
XM_039822377.1 mRNA upstream 351543 35337747 ~ 35343152 (-) True LOC120572870
XM_039821954.1 mRNA upstream 369321 35355525 ~ 35399679 (-) True LOC120572634
TU201582 other downstream 120474 34855108 ~ 34860914 (-) False LOC120572844
TU201571 other downstream 150010 34824648 ~ 34831378 (-) True G149062
TU201452 other downstream 561476 34413280 ~ 34419912 (-) False LOC120572624
TU201453 other downstream 561476 34413280 ~ 34419912 (-) True LOC120572624
XR_005641508.1 other downstream 627950 34352032 ~ 34353438 (-) False LOC120572901
TU201870 other upstream 59721 35045925 ~ 35049559 (-) True G149285
TU201906 other upstream 168878 35155082 ~ 35162119 (-) True G149309
TU201961 other upstream 385566 35371770 ~ 35428656 (-) False G149349
TU202054 other upstream 679453 35665657 ~ 35666244 (-) True G149408
XR_005641490.1 other upstream 889884 35876088 ~ 35882067 (-) True LOC120572755

Expression Profile