RNA id: TU202888


Basic Information

Item Value
RNA id TU202888
length 202
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G149954
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 37705512 ~ 37705713 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGAAATCTGAGGATTACCAAAGGATTTTGGGTCGCAATGTAGGGCCCAGTGTCAAAAAGCTGGGTTTGCGTCTGAGATCGTTGGTcttccagcaggacaatgaccccaaacatacTTCAAAAAGCACACAGAAATGGATGGCAACAAAGTGCTGGAGAGTTCTGAAGTGGCCAGCAATGAGTCCAGATCTAAATCCCATTG

Function

GO:

id name namespace
GO:0005783 endoplasmic reticulum cellular_component
GO:0012505 endomembrane system cellular_component

KEGG:

id description
ko04610 Complement and coagulation cascades
ko04979 Cholesterol metabolism
ko05133 Pertussis
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus
ko05020 Prion disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202871 lncRNA downstream 53317 37650443 ~ 37652195 (-) True G149946
TU202872 lncRNA downstream 53317 37651095 ~ 37652195 (-) False G149946
TU202651 lncRNA downstream 72626 37632644 ~ 37632886 (-) True G149834
TU202624 lncRNA downstream 72925 37621633 ~ 37632587 (-) True G149817
TU202627 lncRNA downstream 75539 37629730 ~ 37629973 (-) True G149818
TU202890 lncRNA upstream 9810 37715523 ~ 37716044 (-) True G149956
TU202894 lncRNA upstream 37466 37743179 ~ 37851932 (-) True G149960
XR_005641402.1 lncRNA upstream 71000 37776713 ~ 37781184 (-) True LOC120572221
TU202915 lncRNA upstream 156141 37861854 ~ 37862674 (-) True G149975
TU202926 lncRNA upstream 180965 37886678 ~ 37907775 (-) True G149986
XM_039822914.1 mRNA downstream 12677 37679659 ~ 37692835 (-) False LOC120573273
XM_039822915.1 mRNA downstream 12677 37679659 ~ 37692835 (-) False LOC120573273
XM_039822911.1 mRNA downstream 12677 37679659 ~ 37692835 (-) False LOC120573273
XM_039822912.1 mRNA downstream 12819 37679659 ~ 37692693 (-) True LOC120573273
XM_039822929.1 mRNA downstream 30430 37654691 ~ 37675082 (-) True LOC120573284
XM_039821970.1 mRNA upstream 254929 37960642 ~ 37963748 (-) True LOC120572652
XM_039823115.1 mRNA upstream 269591 37975304 ~ 37991796 (-) True LOC120573399
XM_039823130.1 mRNA upstream 288064 37993777 ~ 38000091 (-) True LOC120573408
XM_039823116.1 mRNA upstream 301632 38007345 ~ 38010575 (-) True LOC120573400
XM_039823112.1 mRNA upstream 322222 38027935 ~ 38032102 (-) True LOC120573396
TU202630 other downstream 98456 37590595 ~ 37607056 (-) True G149821
TU202635 other downstream 102692 37600942 ~ 37602820 (-) True G149826
TU202540 other downstream 631862 37056582 ~ 37073650 (-) False G149751
TU202541 other downstream 631862 37056582 ~ 37073650 (-) True G149751
TU202465 other downstream 909423 36786761 ~ 36796089 (-) False LOC120572643
TU202911 other upstream 138450 37844163 ~ 37888636 (-) False G149973
TU202908 other upstream 138517 37844230 ~ 37888636 (-) False G149973
TU202913 other upstream 181772 37887485 ~ 37888636 (-) False G149973
TU202950 other upstream 255805 37961518 ~ 37963721 (-) False LOC120572652
XR_005641707.1 other upstream 463780 38169493 ~ 38179480 (-) False LOC120573395

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU80932 True 223 lncRNA 0.39 1 NC_048565.1 65838018 ~ 65838240 (-)
bowfin (Amia calva) TU158505 True 328 lncRNA 0.49 1 CM030137.1 4637958 ~ 4638285 (-)
bowfin (Amia calva) TU80932 True 240 lncRNA 0.61 1 CM030127.1 27236083 ~ 27236322 (-)
mexican tetra (Astyanax mexicanus) TU80932 True 366 lncRNA 0.43 1 NC_035902.1 50093112 ~ 50093477 (+)