RNA id: TU202965


Basic Information

Item Value
RNA id TU202965
length 1650
RNA type TUCP
GC content 0.44
exon number 2
gene id G150012
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 38246640 ~ 38278247 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tggataggcttttatttaattgaaaaagtaaaacatatttgactgtattattgcatgtgttATATTGtgttctcacttacagtttggtcataaacaacataaagtcctaaagaagtcaggaaaaagtgacaacaattttgacaaagtggcaaaaacgttaCAAACATTTCggcaaaaaaaagtgacaaaaactaggcGGGACAAAATGTATTGAGAACCTAAATTGTTATGCGGGCCGGATCCTAATCTATGAGGGGcaggatttggcccgcgggccttgagtttgacacacgtgCCCTAGGCAATCGCCAGCCCTGAGTGGTGGCCAGGATAACATCCATGGTGTTCAGAAGATCAAGTTACTgctggtcagccttcaatgtggagagaagatcagaatataacaactcagctatcagggcatgaggaggaggcaggaggaaacagcttggctctgaaacatgttcactacgaggcagtgtgaatgagctggtgagatttaaggttACTACTCCGAGAAAACATTtttccacattgttcacaccagtacggcttctctccagtgtggatGCGCTGGTGAGTTTTAAGGTGAGTACTCTGAGcaaaagctgccccacattgatcacagctgtacggcttttctccagtgtgaatgcgctggtgagatttaaggctACCACTCTCAGAAAACGTTTTTCCACATTGATCACAACAGTACGGCTTCTCACCAGTGTGAAGGCGCTGATGATTTTTAAGGCTATGTCTGTGAGAAAacattttcccacattgttcacacccgtacagcttctctccagtgtgaatgagcTGGTGAGCTTTAAGGCTACCACTCTCAGAAAACTTTttaccacattgttcacaccagtacggcttctcaccagtgtgaatgcgctggtgttTTTTAAGGTCACCACTCAGAGAAAACATTttaccacattgatcacagctgtaaggcttctctccagtgtgaatgcgctggtgagaGTAAAGGCTACCACTACTAGAAaatgttttcccacattgttcacaccagtatggcttctctccagtgtgaacacgtcggtgGATTTCTAGAGTACTACGAGTAGAACAGGTTTTACCACatagatcacagctgtaaggtttatctccagtgtgaatgcgttgatgtattTTTAGATTACTCTGTTTTgcgaaagctgccccacattgatcacagctgtaaggtttatctccagtgtgaatgcgttgatgtctgTTTAGGGTACTCTGTCGTTTGAAAGCtgtcccacattgatcacagctgtaaggtttATCTCCAGCGTGAACGCGTTGATGGCTTTTTAGGTTACTCTGTCGTGCGAAAGCtgtcccacattgatcacatcTGTAAGGTTTATCTCCAGCATGAATGCACTGATGTGCTTTAAGGTGACACTGGTGtatgaaagctgccccacattgatcacagctgtgtagattctctccagtgtgaactctctgatgaatctttaaatatgcAGAGGTTttgaaggatttgtcacagtgttgaCAGTGGTGACGTTTGGGTCCCTTTCCTCCTCTCAGTTTCTATaacaacagacagagagacagagagagagagagagagttattgAACAACCTTCTTTAAAC

Function

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process

KEGG:

id description
ko03410 Base excision repair
ko04110 Cell cycle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641710.1 lncRNA downstream 103349 38137603 ~ 38143291 (-) False LOC120573409
TU202977 lncRNA upstream 44324 38322571 ~ 38323111 (-) True G150021
TU202978 lncRNA upstream 44324 38322571 ~ 38323111 (-) False G150021
TU202986 lncRNA upstream 69318 38347565 ~ 38347971 (-) True G150029
TU202987 lncRNA upstream 69318 38347565 ~ 38347971 (-) False G150029
TU202988 lncRNA upstream 69318 38347565 ~ 38347971 (-) False G150029
XM_039823129.1 mRNA downstream 44296 38199809 ~ 38202344 (-) True LOC120573407
XM_039823111.1 mRNA downstream 67161 38170079 ~ 38179479 (-) False LOC120573395
XM_039823110.1 mRNA downstream 75977 38155598 ~ 38170663 (-) False LOC120573395
XM_039823108.1 mRNA downstream 75977 38155598 ~ 38170663 (-) False LOC120573395
XM_039823109.1 mRNA downstream 75977 38155598 ~ 38170663 (-) False LOC120573395
XM_039823121.1 mRNA upstream 7645 38285892 ~ 38338759 (-) False LOC120573402
XM_039823119.1 mRNA upstream 7645 38285892 ~ 38294191 (-) True LOC120573402
XM_039823120.1 mRNA upstream 7645 38285892 ~ 38293940 (-) False LOC120573402
XM_039823104.1 mRNA upstream 197516 38475763 ~ 38487369 (-) True LOC120573391
XM_039823105.1 mRNA upstream 197516 38475763 ~ 38485653 (-) False LOC120573391
XR_005641707.1 other downstream 67160 38169493 ~ 38179480 (-) False LOC120573395
XR_005641705.1 other downstream 67160 38169493 ~ 38179480 (-) False LOC120573395
XR_005641706.1 other downstream 67160 38169493 ~ 38179480 (-) False LOC120573395
XR_005641704.1 other downstream 67160 38169493 ~ 38179480 (-) False LOC120573395
TU202950 other downstream 282919 37961518 ~ 37963721 (-) False LOC120572652
TU203204 other upstream 209721 38487968 ~ 38541170 (-) False LOC120572653
TU203205 other upstream 209721 38487968 ~ 38505641 (-) False LOC120572653
TU203212 other upstream 250670 38528917 ~ 38533300 (-) True G150174
TU203219 other upstream 283022 38561269 ~ 38633052 (-) False LOC120572655
TU203233 other upstream 333408 38611655 ~ 38689593 (-) True G150192

Expression Profile