RNA id: XM_039822065.1


Basic Information

Item Value
RNA id XM_039822065.1
length 3800
RNA type mRNA
GC content 0.49
exon number 11
gene id rela
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 6549081 ~ 6566567 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGTACACAGATGTGGGTGGAGCGAAGGAGGCGACAGGACAGCAATGTCAAGAAGTTTTTCTGTGTCCGCGCTGTCGCGTCTTTTAgctgaaaagacaaaaacaaacaacaaataaacagtGGTGTCGACGGAGAAGCGCGAGTCGGACCCGGACACGGCCATGGACAGTGTGTATGGATGGGGCCTGACCCCACTCAACCCAGTCCAAGCTGCAACCCCCTACATAGAGATCATCGAGCAGCCCAAGCAGAGGGGGATGAGGTTTAGGTATAAGTGTGAGGGCCGTTCGGCTGGCAGCATCCCCGGGGAGAAGAGCAACGAAACCACTAAGACCCACCCAGCTATCAAGGTGCACAACTACAGCGGCCCGCTGCGTGTTCGCATCTCGTTGGTGACGAAGAACGCGCCCCACAAGCCTCACCCCCACGAACTGGTTGGGAAAGACTGCAAACATGGCTACTATGAGGCGGACCTGCAGGAGAGACGGATACACAGTTTTCAGAACCTGGGCATACAGTGTGTCAAGAAGAAGGATGTGAATGAGGCCATCACTTGTAGGCTGCAGACCAATAATAACCCCTTCAACATTCCCGAGGCGAAGGTGTGGGAGGAAGAGTTTGACCTGAACTCGGTTCGGCTTTGCTTCCAGGCCTCCATCACTCTGCCAGCAGGGGATCTGTTCTCTCTGGACCCCGTGGTGTCGCAGCCCATCTTTGACAACAGGGCCCCAAACACAGCTGAGCTAAAGATCTGCCGAGTCAACCGCAACTCTGGAAGCTGCAAAGGAGGGGATGAAATCTTTCTGCTGTGTGACAAAGTGCAAAAAGAAGACATCGAGGTGCGTTTCTTCCAGGACTCCTGGGAGGGGAAGGGCACGTTCTCCCAGGCTGACGTCCACAGGCAGGTGGCCATTGTGTTCCGCACGCCGCCATACCGCGACACTAACCTCTCAGAGCCAATTAGAGTCAAGATGCAGCTCCGCCGGCCCTCTGACCGCGAGGTCAGCGAGCCAATGGACTTCCAGTATCTGCCCGCTGACCCAGATGAATACAGGCTGAGTGAGAAGAGGAAGCGTACAGGGGACATGTTCCAGAGCCTGAAGCTGGGGCCCATGCTGTCTAGTGTGTCCATTCCACAAGATAGACGGCACATAAGCCCGGCAAGGAGAACAGTCACAGCCAAGGCTCCGTCCCAAGCAGCTGTGCTGCCCCCTGGTGCCAGTGGAGCAAAAGCCCAGCCTTCCTACTCCTATCAACCAGGCCAGCTCTTCTCAGTCCAGCCCAAGATGGAGGCCTCCCCCTCCAACTCTGCTGCAGCCTCAAACCAAACCTGGAGGATCATGGAGAGCCTGAACCTGGGCTCCCAGCCCAAAGCCACGCCCGTGTCCAACTTTACACTGAGCCAGGCAGCCCCCTCCTGCCCCTCTACCGCCGCTCCCACCACCAACCAAGACTACCCCACCGTCAACCTGTCAGACCTCCATGAATTCTTCCCCAACATTTCCTCGGCCATGGCCCAGGAGCCTGCACCTTCTCAGGGGAGCGCCGCCTCCTCGCAGCCCAGCGGCTCCTTCACCATGCACGGCTCTCAGTTCCGGGTGGACGGCGAACTCGCGGACGACGATATGCCAGAGTTCCCGAGCTTCTCCGAAGCCCAGGCCTCAGGCGCTCTGGACAACCTAAACATGGACGACTTTGAGGACCTTCTGAACCCCGCCCTGATGAGCGAGAGTGGAAACGGCAGCTCCATGTTGGCTCAAGCTTCGTGCCAACAGGCCGCCCCTCCCAGCTCTTCTTCTGCGGCCCACAGCGCAGCATCCCAGAACACTTCTGACCCCGCCGGCATCCCAGGAAGCACCTGGATGAATTACCCCAACAGCATCGTCAACTTGCTCCAGAACGAGGGCATGATCGGCATGGcgtccaacaacaacaaccaccggCCCCCCGTGCTGGACGAGTTTGATGAGTTGATGTCCGCCGACGAGGATCGTCTAATTTCTATTTTTAATAGTGGAAGCTAACCTGGGTTTGTGTCGGGACACCCGACTTCAAGCTTATCCACGTGAATTGTTTTAAGGACTTATTTACATAGTCCACTTGTATCTGCCCTTTTTACCTTCTGAACTAAAAGTCCTTTGTTgttataaaagacaaaaaaaggaaacaaggtGGATATAATAGGGCTGTAAGAGACGGAATGTAGCAAAACTGCTCACTGTGGAAACACCAGCAAAGACTCTTATGGAATGCTATTAGAGGGTTTTGCCAGGCCTTTAGATACAGTTTGACCGAAAAATGATATAAAAGACAGGACTGAActagttcagatttttttcttttcgccTTTGTTAAAGCCTTGTACTATACAGACAATCTGATCAGATTGCAGAAGACATCTGAGGCCTGTACTCGcgtattttacataagaagagcaaactataattctacatgaatatgaagaacacagacactgttTTACAAGCAAAACACAATACactcgctgcttcctaaaaccgGAAGGAAAGccggcaaaaaaataaataaatagccgaCACCGtaaatgcgtaaatcacaacgcttatcaatatcacttccacATCAGTCAGACAcaaagatctgaccataattacacttgtgctttccatatcTTCCGTTGCTTTAACctgttatttcagttgcaaccctggcagtgggaagcaatcgtgagagcaaagaaaaaatataaaaacataattcaaactgatgtgtggcattggcgacacacggctcaacaatgcgacaaatagcctatacgtaattccctccgctgaaaatctgtatttcataaaaatagcGATCAGGGAacgttaacggggttgtcggtctctcaATGTCTGAACTTTTCTGAGCGtacctctctctcgctctccctcgCTCTTCCTCCCTGCACCAAGCTCCAtttgatcttctaagaacggtgacgccgttatcaaccgagtattgattggtcgccaggcggtgcttttacaccggttctctaatctccaacataacctgctctcGACCAGGTTCAGCGTAAGTTctcacggcgattgaacccggtaacaatcGATCCACCGCCATGGTACacgaaaccctgggttgaacctgaagttaccacagtaaacgccaaatcttgcctcgtagtacaggcctctgttcTGTGCAACACGTTAAGCATGTTTTTGTCATGTGAACATCTTTGGTCACTCTGAAATGTGTACGTTTTGGTCTGCCTTTTGATTTTTAAACAAAGCGGTAGGTGTTAATCAAGACGTAGAGGTAAGTCTATGCAAACGATGCCCATCGTCCTTGTAATTAAATGTCCCCATGTATTACTTTGAAACTTATTTGAATGTGTCGTGAAGGTCAGCAGTAACTAACTTTCTTACGCAGGTTCCTTTGTTGAGTGTCAACAAAATGTAGTAGTGAACCAAATGAAGGTCTACATATAATTATTAAACAAGCAACATTTATAAGTACATGCTTATAGCAGAGAAGCTCACACTCGTGGAGCTGTATCCAATCTCGTTTTTTGTGTAATTTCCTCTGGTCTCGAATCAGTTTTTCTACAGTTATTTTATGTAATAATGGCTGCAGTTTAACTCAATATTTCAGACCTGTAAGTCAACTTGCTTTACTCTGTAGTAAAAGATGCTGTTTTATACTGGTATGATGTTAGCAGGTTATGCCATATGCCTTTTTGTTGTAATAAatgattgtcacaaaaaaataaatccaaaacacttttcttgtcaataaaaaccacaacatatTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191072 lncRNA upstream 25456 6514814 ~ 6523625 (+) True G141652
TU191067 lncRNA upstream 65929 6471771 ~ 6483152 (+) True G141650
TU190939 lncRNA upstream 96405 6451661 ~ 6452676 (+) True G141550
TU190919 lncRNA upstream 170708 6376026 ~ 6378373 (+) True G141531
TU190877 lncRNA upstream 213660 6330490 ~ 6335421 (+) True G141497
TU191097 lncRNA downstream 1742 6568309 ~ 6570482 (+) False G141660
TU191095 lncRNA downstream 2428 6568995 ~ 6570482 (+) False G141660
TU191096 lncRNA downstream 2428 6568995 ~ 6570718 (+) False G141660
TU191098 lncRNA downstream 2428 6568995 ~ 6570718 (+) True G141660
TU191057 lncRNA downstream 5154 6571721 ~ 6578757 (+) True drap1
XM_039821831.1 mRNA upstream 13205 6492379 ~ 6535876 (+) True LOC120572493
XM_039823247.1 mRNA upstream 260850 6280432 ~ 6288231 (+) True mpdu1b
XM_039823251.1 mRNA upstream 271740 6267364 ~ 6277341 (+) True LOC120573493
XM_039822068.1 mRNA downstream 5320 6571887 ~ 6577918 (+) False drap1
XM_039822499.1 mRNA downstream 22384 6588951 ~ 6640245 (+) True LOC120573071
XM_039821543.1 mRNA downstream 1138280 7704847 ~ 7715407 (+) False alpk1
XM_039821541.1 mRNA downstream 1138988 7705555 ~ 7715407 (+) True alpk1
XM_039823327.1 mRNA downstream 1150037 7716604 ~ 7721656 (+) True LOC120573538
unassigned_transcript_684 other upstream 312007 6237003 ~ 6237074 (+) True trnaw-cca_15
unassigned_transcript_682 other upstream 520368 6028640 ~ 6028713 (+) True trnat-agu_5
TU190258 other upstream 2061474 4483692 ~ 4487607 (+) True G141063
TU190255 other upstream 2104134 4440638 ~ 4444947 (+) True G141060
TU190186 other upstream 2233543 4313366 ~ 4315538 (+) False zgc:112271
XR_005641634.1 other downstream 22384 6588951 ~ 6640245 (+) False LOC120573071
TU191293 other downstream 1150047 7716614 ~ 7717329 (+) False LOC120573538
TU191297 other downstream 1151453 7718020 ~ 7721637 (+) False LOC120573538
XR_005641421.1 other downstream 1423631 7990198 ~ 7997708 (+) False LOC120572330
XR_005641422.1 other downstream 1423631 7990198 ~ 7997707 (+) False LOC120572330

Expression Profile