RNA id: TU190258


Basic Information

Item Value
RNA id TU190258
length 3916
RNA type TUCP
GC content 0.43
exon number 1
gene id G141063
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 4483692 ~ 4487607 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCACGGTGTTTGAGTATTTATTCAAAGGTTGTGGAGAGAATTCATATCTCACATGTTGGCCATGTACAAATGAAAAGTGAGAGTGAAGAAACGTGAGGAGCCAAAGAGGATCTCGCTCCACACCATCATACACAGTATAAACACACTATTACACACGTTCGATCATTCATTTCACTGTAACttcattttaaataattaagtGCTATTTCAGAACTCTTTTAGAGTGATGTGGGGGCCCTATTGTCAGCCAAAGTGGCTCTGCAGGGAGAGTCTGCCTGGCCACACTTTTCCTTCACTACGACATTTTGTATCAAAAGCTTCAACTGAGCAAATTCTGTCAATGTACAACAGAGTAATAGGGGCACTGGTAGGGATTagttaaataaaaatcacaatgTGTGCATGGTTTAGTTTTGGCTGACATTCAAATACACGTTTCAAAATATTACTTTATTCTCAAATTCTACGACTTTTgtcttgaaatattacatctTCAAACATTATACCTTTTCCCTCAAAATAGTAAGACTGTTTTGCGTAATATATTTGTCTTAAAAGGTCAACTTTATTCTGACATTCCGACTTTATTTTCCAAATGTAACAACTTTTCTTCTAATGTATTTTCTCAAAATACAACTTGTTTTtcacaatacttttttcttcaattcattttcttttttttcccctcagcaTATAAtgaagtgttttgtgtgtgtgtttgttttaacagTAGCCCTTACACTCTGGTGTATTTATAGCATCCCCTATACAACCGAAGTATCTTCAGATGTCTCAGCCTCCCTAAAGATGACTGATGAAATGGTTGTTGATGAAAACAGAATCCCTGAGTTAAATTATCCAGgtgaaaacatgacattttatggcagacttttttttttttcctccccctttctctgGCCGCCGTTATTCTTTAGTTTGTTATTCTTCAACTTCTTCTGTTGCATACATTTTGTACAGTGGATGAAAACATGAAGCGGTACCAAAGCTGGAGCAAGCTTTTCAAAGCAAAAGTCCTTCGAGCCGTTCTCCAGCCGTTAAACCACACAGTCATTGTTGAAATCTTGAATGAAGTAGAAAAACTGGACAGAATTACAAACACGCTTTGTAGAAACCAGGGTGCATAAAAGTGCTTgtataaaggaaaaaaatacttctattttttttttctacatatatttacatattcttttttttctgtgcagtTGTAGCTAAGATGCATTGTAGGTGATGGAAAGGATGCAGGCTGACAGAGAGATAACATATCTCATTATAAtggatgagagagaggaggacgTCCTTCTCCTCCACTGTAAACAAGGAATTAAATAGACTAGAGAAATCACTGACTGCACGCTGGCATTCATTGTCTTCAGCAATAACATCAAACACAGTCTCATTCAACCGGCTGTACAGAAGGAAAGCTGGGCTTTAGTACATTTTTGGGGACAAAGTGCTGGGTTGTCTTCAGACACATTATCGTAAAACTAATTCATCACGGCCCTTACCGAAGACTGTTTCTAACTTCCTGAGAGCGTAAGACTCAGGCCCCGGCTAGAAACAAGCCCTGAGCCCcctgctgcccccccccccctccctgggCCCCATCCTGTACCTGAAAGATAACAAGTAGACATACCATTACTACAAATATGCCAATTTGgagttcaaataaataaatatccagACACTCATGCAAGAGATCTTAAAGCCCCGATATCAATATTAGTGGCTGACTGAATTCAGACTAAATTCACTTTTCTATAATTGGTCCATGGCACACATTAGAATGGTACAGTTCACCACAGTTTCACTCTGCACGAAAGCACCATGGCGACTTGCTAATGGATTGATTGGTTGGTGAAGTTGCGGCTACGTGCAGGGCTAGTGGGTAGGGCTGGGTCACCAATTCCATACTGTTCAGGCACAGACCGAAATGCCTCCTTAGTATCGGTATGGAAAACTGCCTCGTCATTCgattaccaaatttcaatacctaaggagcaaATCTCAACAGCGTCGGTGAGCCAAtgagcacgcagcatgcttctaccaagatctaataatgtttgtgattggctgtctaacgttacaagTCGTAGAAGCATGCAggaaaaaaatctacttaacaCAGAGACATagcaggagctgaaaaataaaaagattttagattgttttttgtaatgtgtaatgtgttgtaatttctttttgttcaaATGGATTttatgaaattgaaattgaaaaaaaagtattgttcagGAACAGGAATCAACgtcacagtattggtatcggcACCAGTATTGAATTTCTTTGAACAATACCAAGCCCTGCTAGTGGGCGAGCTAACACGCTAGCTGGCCGTGAacatgctaacgctagccagccacaATAGCTCAGAGATTTCCCGGTCACAAACGCCGGTTTGATCTGACCCTCGCCTGAGGACCTCATGTGATGTCAGAGTCGCAGAAGTCAACTGTTTTCCGACTCGAGACGCCAACCTGCCGCCTGTAGTCTGCCAGGGAACATCTCTAGTGCAAATTACTGACAACTTATTTCACCAAACACACAGTCTGATGAATGGAGCCCTAGGTAACTAATATTTAGCCCTATGTTTTTCTGCCTCTGCTTGGACAATTATCAAGCTGTACTGGAAACTACCGACACCCTTAACAGCATTTTAGGCACACATTTAGAAGGGATCATCTAGCTACCTAGCAGGAAGGTCAggaatgttttattgttattataaatattgtttattattataaataatttccTAAATCTCACGAGGTCCTCAGGTAACACCGATCCTGTTCAGATAAGGCTTTAGTTTTAAATGAGCTGGGCTggactttcattttttttttttttaggccatgACATTTGTAGGTGGTAACATATTCAGGTTGTGACATTTCCTCTGTGGCAGTTGCTACCCGCCACTTTAACCATAGCACACTCTcagattcaaataaaaaaaaaaggggaaattcCAGTATTTGTCAGCCTGGGTCTTATTCTCAGACTTTTCAGGATACCATTTCACTCTGCACCTGCAATGTAGAGATTTGGGAAATTTTGAACAAAGTCAGAGGGCCGAGAATAAGGCCCTGTTGGACTAATACTTGAATTTCTCTTTAAGAAAGAAGGTAGGAAGGCTGTTTCTGAACAGGGGCCGCGTGAGGAGCATCGGACGGAAGCCCTTTCTACGTGCCAAAGTGTGCTGGAGTGGGAGCCAGTTCGGTGTGTCCGTGGTCCTGGGCCGAGAAGCAGTCGTCAGAGTGGACGAAGTGCATGGCGGCCTGGTTGTAGCTCAGCAGGGCCTGCTGCTTCTCCTCGGGGCCGTAGTCCAGAGAGTGGGGGTGCACCTGCTGGATGTGCCTCTTGATGGTGCTGACCTTCAGCGTGGCCAGAGTGGCTCCGCACACCATGCAGATGAGCCCGTGTCTGCGGCAGTCGTAATCCATCAGGTACTCCATCCGCCAGCGCGCCTGGTAGTTCCTCCGCTGGTCCTTCCCAGGGTAATGGCTGTGTCGAGACGGCGTGGCCGCAGCGCCGTCGTCCCTCGCTCTGCCCTTCCCTCCGCTCACACGCTCCTCCTTCTTCACCATTTTGCTGTGTGTTCTGACATCAGGGGAGGTGTCCTCGTTGCTCTCTCCTGTGGTATTCAGGACATCGGCTTCGCTCGGGTTGATTTCTGCTAAAACAGCAGGGAGGGGGCTGCAGTAGTTAAACTAAATGAAACCACCTCACTCTGACACCCTTAGCCAAGAACTACTGACAAACAAAGCTGCCTTTCTTACATCAAAAGCTGCTAGgtcatatttttgtatcttaaagTTGCAATATGTCAAGATATGTATTTGCTTCATGTTGCACAGGTTAACTCTGAGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190237 lncRNA upstream 115355 4366561 ~ 4368337 (+) True G141052
TU190239 lncRNA upstream 124234 4358921 ~ 4359458 (+) True G141054
TU190223 lncRNA upstream 141386 4332302 ~ 4342306 (+) True G141045
TU190227 lncRNA upstream 143729 4338533 ~ 4339963 (+) False G141045
TU190222 lncRNA upstream 151705 4330856 ~ 4331987 (+) True G141044
TU190277 lncRNA downstream 133 4487740 ~ 4487994 (+) True G141079
TU190278 lncRNA downstream 674 4488281 ~ 4488527 (+) True G141080
TU190280 lncRNA downstream 2386 4489993 ~ 4490601 (+) True G141082
TU190283 lncRNA downstream 5070 4492677 ~ 4493034 (+) True G141084
TU190295 lncRNA downstream 154098 4641705 ~ 4664198 (+) True G141093
XM_039821435.1 mRNA upstream 4405 4447409 ~ 4479287 (+) True rtn3
XM_039821432.1 mRNA upstream 4405 4447409 ~ 4479287 (+) False rtn3
XM_039821433.1 mRNA upstream 4405 4447415 ~ 4479287 (+) False rtn3
XM_039823283.1 mRNA upstream 168147 4313151 ~ 4315545 (+) False zgc:112271
XM_039823284.1 mRNA upstream 168147 4313346 ~ 4315545 (+) True zgc:112271
XM_039822099.1 mRNA downstream 9841 4497448 ~ 4511964 (+) False si:dkey-28a3.2
XM_039822101.1 mRNA downstream 12101 4499708 ~ 4511964 (+) True si:dkey-28a3.2
XM_039822100.1 mRNA downstream 12102 4499709 ~ 4511964 (+) False si:dkey-28a3.2
XM_039822098.1 mRNA downstream 12102 4499709 ~ 4511964 (+) False si:dkey-28a3.2
XM_039823545.1 mRNA downstream 41091 4528698 ~ 4594420 (+) True eml3
TU190255 other upstream 38745 4440638 ~ 4444947 (+) True G141060
TU190185 other upstream 168154 4313159 ~ 4315538 (+) False zgc:112271
TU190186 other upstream 168154 4313366 ~ 4315538 (+) False zgc:112271
TU189948 other upstream 1179061 3256551 ~ 3304631 (+) False mllt3
TU189860 other upstream 1580121 2828052 ~ 2903571 (+) False ablim2
unassigned_transcript_682 other downstream 1541033 6028640 ~ 6028713 (+) True trnat-agu_5
unassigned_transcript_684 other downstream 1749396 6237003 ~ 6237074 (+) True trnaw-cca_15
XR_005641634.1 other downstream 2101344 6588951 ~ 6640245 (+) False LOC120573071
TU191293 other downstream 3229007 7716614 ~ 7717329 (+) False LOC120573538
TU191297 other downstream 3230413 7718020 ~ 7721637 (+) False LOC120573538

Expression Profile