RNA id: XM_039823283.1


Basic Information

Item Value
RNA id XM_039823283.1
length 532
RNA type mRNA
GC content 0.44
exon number 4
gene id zgc:112271
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 4313151 ~ 4315545 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCGGTCAGTGACGCCCACCCCATCACGGACGGTGACTGGAATTAGCGAAAAACAAACACCGTCTAGCGTCTATTACACAACCTTTGACATGGCTATTACAGCTGATCACATCAGGGATAAACTTATAAAGGAGCTCCCGGCAGTGCACGTGGATGTGGAGGATACATCACCCAACAGATGTGCTGCCAGCTACAAAGTCCTGGTGGTGTCAACCCAGTTTGAGGGCAAACCACTGTTACAGAGACACAGGATGGTGAATATGTGCCTAGCCGAGGAGCTGAAAGAGATCCACGCTTTTGAACAGAAGACCCTCACACCAGAACAGTGGGAGAAACAGAAATCACAAtgacccaaacacacacacacacacacacacgttatatCACACTCACATTAGTTTCAAATTTCTACTATAAATTAGGCCTTATGCTCTGATATGTAGAAAAAGAATACAAGTGCTCTCTGTAAATCAGCAGTATTGATATGAAGCAATGGAATGTTCTGGTGGTAATAAAACACTTTGGTGATGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190062 lncRNA upstream 638683 3674091 ~ 3674468 (+) True G140925
TU190024 lncRNA upstream 733804 3523111 ~ 3579347 (+) True G140896
TU190023 lncRNA upstream 798746 3514176 ~ 3514405 (+) True G140895
TU190011 lncRNA upstream 850968 3461858 ~ 3462183 (+) True G140884
TU189955 lncRNA upstream 855765 3455522 ~ 3457386 (+) False G140832
TU190222 lncRNA downstream 15311 4330856 ~ 4331987 (+) True G141044
TU190223 lncRNA downstream 16757 4332302 ~ 4342306 (+) True G141045
TU190227 lncRNA downstream 22988 4338533 ~ 4339963 (+) False G141045
TU190239 lncRNA downstream 43376 4358921 ~ 4359458 (+) True G141054
TU190237 lncRNA downstream 51016 4366561 ~ 4368337 (+) True G141052
XM_039821980.1 mRNA upstream 13561 4286328 ~ 4299590 (+) True LOC120572661
XM_039821979.1 mRNA upstream 30480 4271925 ~ 4282671 (+) False si:ch211-212k18.7
XM_039821978.1 mRNA upstream 30480 4271926 ~ 4282671 (+) True si:ch211-212k18.7
XM_039821460.1 mRNA upstream 60309 4236291 ~ 4252842 (+) True LOC120572240
XM_039823453.1 mRNA upstream 102796 4205927 ~ 4210355 (+) True rwdd
XM_039821435.1 mRNA downstream 131864 4447409 ~ 4479287 (+) True rtn3
XM_039821432.1 mRNA downstream 131864 4447409 ~ 4479287 (+) False rtn3
XM_039821433.1 mRNA downstream 131870 4447415 ~ 4479287 (+) False rtn3
XM_039822099.1 mRNA downstream 181903 4497448 ~ 4511964 (+) False si:dkey-28a3.2
XM_039822101.1 mRNA downstream 184163 4499708 ~ 4511964 (+) True si:dkey-28a3.2
TU189948 other upstream 1008520 3256551 ~ 3304631 (+) False mllt3
TU189860 other upstream 1409580 2828052 ~ 2903571 (+) False ablim2
TU189858 other upstream 1409580 2857755 ~ 2903571 (+) False ablim2
TU189672 other upstream 2253784 2055439 ~ 2059367 (+) True G140613
TU189616 other upstream 2280926 2022592 ~ 2032225 (+) True G140594
TU190255 other downstream 125093 4440638 ~ 4444947 (+) True G141060
TU190258 other downstream 168147 4483692 ~ 4487607 (+) True G141063
unassigned_transcript_682 other downstream 1713095 6028640 ~ 6028713 (+) True trnat-agu_5
unassigned_transcript_684 other downstream 1921458 6237003 ~ 6237074 (+) True trnaw-cca_15
XR_005641634.1 other downstream 2273406 6588951 ~ 6640245 (+) False LOC120573071

Expression Profile