G140613


Basic Information

Item Value
gene id G140613
gene name NA
gene type unknown
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 2055439 ~ 2059367 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU189672
CTCTACTtggcatacacaatttatacatcaaaacgtaggtatttttgtctagtttcagaaaatctgctcagttttgtgatacgccttttacttttggctggttgagcttccaaatgacaagatctccatatcgttctccattgactccaatgatcaaactcctggatatttcccagcgaaacactgaacaaaccactttttgaaatcgctgatatgaccacatttttacgtttatccatatatattttataccgatacgttcacaaaggccttgtggtgctcaggatcacgtcatttgactgatagcagttatggtttttccactgtgaggctttgtttgagagcttgctctcagtgtctgaagtgctgcggtgtgctacaggagacatattaagaccaggtgctatcgttatcagatcaaagagatgtttataaacatggccaGgcccttagtaaccatgacaaccctttcacagacagtctactgattactccaggcttgctgtaggagtcaactaactagactaactatgatcatcaggctatatcatttgcgttccacttctgtctgtctgtttgtctgtctgtctgtctccttatctgtctgtctctccctccctctgtctctccctccctccatccttctcaatctctctctccttccatcactccttctctgtctctctctctctctctccctcccttcctctctctcactccctcctgtctcactctctttctctatgcctccctccctccttctttctcttttctctgtcttcctccctcttctgttcccctccttccttccttcagtcttcccccttccttctctccctccctctgtctctccctccctccatccttctcaatctctctctccttccatcactcctctctctctctctgcctcccttcctctctctcactccc

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0006376 mRNA splice site selection biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0000245 spliceosomal complex assembly biological_process
GO:0008380 RNA splicing biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU189672 True 933 TUCP 0.46 2 2055439 2059367

Neighbor

gene id symbol gene type direction distance location
paqr9 paqr9 coding upstream 313070 1739323 ~ 1742369 (+)
rap1gds1 rap1gds1 coding upstream 434589 1582729 ~ 1620850 (+)
spata6l NA coding upstream 511553 1522996 ~ 1543886 (+)
trmt10a trmt10a coding upstream 535874 1508801 ~ 1519565 (+)
ccdc96 NA coding upstream 549785 1488484 ~ 1505654 (+)
LOC120572444 NA coding downstream 150841 2210208 ~ 2210559 (+)
ank2b ank2,LOC103361685,LOC107384730 coding downstream 219567 2278934 ~ 2450242 (+)
mad2l1 mad2l1,LOC102790739,LOC103155071,LOC106941438 coding downstream 605322 2664689 ~ 2669131 (+)
zcchc4 LOC104953644,LOC104953641 coding downstream 749533 2808900 ~ 2824015 (+)
afap1 afap1 coding downstream 896981 2956348 ~ 3108934 (+)
G140587 NA non-coding upstream 31556 1937849 ~ 2023883 (+)
G140578 NA non-coding upstream 70891 1902652 ~ 1984548 (+)
G140586 NA non-coding upstream 117791 1933298 ~ 1937648 (+)
G140584 NA non-coding upstream 118415 1932222 ~ 1937024 (+)
G140585 NA non-coding upstream 120457 1933228 ~ 1934982 (+)
G140608 NA non-coding downstream 1764 2061131 ~ 2070512 (+)
G140635 NA non-coding downstream 94997 2154364 ~ 2154765 (+)
G140640 NA non-coding downstream 106869 2166236 ~ 2214162 (+)
LOC120572447 NA non-coding downstream 235374 2294741 ~ 2295714 (+)
G140650 NA non-coding downstream 275587 2334954 ~ 2335560 (+)
G140594 NA other upstream 23214 2022592 ~ 2032225 (+)
G140582 NA other upstream 24812 1929623 ~ 2030627 (+)
frem1a frem1,LOC106908230,LOC105925506,LOC101079287,LOC108244244 other upstream 329971 1677210 ~ 1725468 (+)
LOC120572292 NA other upstream 1432404 621116 ~ 623035 (+)
G140263 NA other upstream 1719263 335882 ~ 336176 (+)
ablim2 ablim2 other downstream 768685 2828052 ~ 2954690 (+)
mllt3 mllt3 other downstream 1197146 3256513 ~ 3433803 (+)
zgc:112271 LOC103361642,LOC104959592,LOC100706616,LOC104935668 other downstream 2253784 4313151 ~ 4315545 (+)
G141060 men1 other downstream 2381271 4440638 ~ 4444947 (+)
G141063 NA other downstream 2424325 4483692 ~ 4487607 (+)

Expression


Co-expression Network