afap1 (afap1)


Basic Information

Item Value
gene id afap1
gene name afap1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 2956348 ~ 3108934 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039822794.1
aggagagaaggaaaagggaggaggaggaagatccGGAGAAAAAGTTTGAAAGGAAAAATAGAGAGACGTTTCAGTGGCTCGGGAGGAAAGAATAAGTGGAGGTTGAAACTGAAGGCACAAACGGCTTAAAGtgactctgtctctctgtgtgtgtgtgcggattTTACTGGTACCGGGTAGCCGCTCGCCTCGCCTTTCCTCGCGCCCGCCGCTGAGCGTTGTCGGGCGGGTTAGATGAGTTGGACTTCACGATGAGGAGCGACCCTGTTCTGTTCTCTTCCAGCAGGGcgaTGGAGGAGCTGGTGTGTGAGCTGCGTCTGTTCCTGGACCTATTGGACCGGGAGTATCTGAGCGCCGGGGTTAGAGAGAAGAAGATGCACCTCTCCAACATCCTGCACAGAGTCCTCTCAGAGAAAGAGCCTTCATTCAAGTCAGAGATGCACAGTGGTCTGCCGGCCCCGCCTCAGATGCCCCTGCCCGAGATACCTCACCCCTGGCTGcCTCCAAACAGCGGCCCTCCCCCTCTGCCCAGCTCCTCTCTACCAGAAGGCTACTATGAGGAAGCAGTTCCTTTAAGTCCTGGAAAGGCTCCTGAATACATCACTGCCAACTATGACTCGGACGCTATGAGCAGCTCCTATGAGTCATAcgacgaggaagaggaggatgggaAGGGCCAGAAGATGCGTCACCAGTGGCCGTCTGCAGAGGCGTCCATGGATCTGGTGAAGGATGCTCGAATCTGTGCGTTCCTTCTACGCAAAAAGCGCTTTGGCCAGTGGACCAAGCTCCTGTGTGTCATCAAAGATAACAAACTGCTGtGTTACAAGTCATCCAAAGACCACACCCCCCAGATGGAGCTGACCCTGTCAGGGTGCAGCATCACTCACATCCCAAAAGACGGCAAGAAGAAGAGGCACGAACTGAAGATCGTCCATCAGGGGGCAGACGCACTGGTGTTGGCTGTGCATAGCAAAGAACAGGCAGAGGAATGGCTCAAGGTGATGAGAGAGGTTTGTGTTAATGGGGGTGTAGACCTGGATGGAGCTGGATCTGGATCACCAGTGCACAAACCTGAACTGGaaaagAAGGCATCGTGTGACAGACCGAGCTCCGACGGTGAAGCCCCTCATGAGAACGGACACAGCGACTGCAAGGACCAAGgaaaaggaaagaagagcTCAAAGTCGGAGCAGAAGACTGGGACGGTGGGGAAGGGAGCAGGGAAGAAGATCACTAAAATCATCGGTCTGGGTAAGAAGAAGCCGTCCACAGATGAGCAGACCTCGTCAGCAGAAGAAGACGTACCCACATGTGGTTACCTGAACGTGTTGTCCAATAACCGTTGGAGGGAGCGCTGGTGCCGCCTGAAAGACAACCAGTTGCTCCTTCATAAGGACCGAGACGACCTGAAGAGCCACATCGCCTCACTGCCCCTCGGAGGCTGCGAGGTCAGCCCCGGCCTGGATCACAAACATCCCTTTGCCTTCCGCCTGCTGCGTAACGGCCAGGAGGTCGCTGTCCTGGAGGCCTCGTCCTCTGAGGAGATGGGGCGCTGGTTGGGGATTTTACTGGCTGAGACCGGCTCCACCACCGACCCTGCCACCCTGCACTACGACTACATTGACGTCGAGACCACCGCCAATGTCATCCAGCTGGCCAAGCAGTCCTTCTGTTTCACCAGTAAGCGTGCTGTCTCTCCTAACCCGTACCTGGACAACCCAGTCAACGGCTACGCCTGCCCCACTGGTATGGCTCTGCACTATGATGATGTACCCATTAACGGAATGGACCCGGAGGCGCAGTACTCCCGTCCCAGCACAGGGGGGCGCCAGCTGAAAGAGGAGCTGCACTATGAGAACACTGAGCTCTATGAGAACATGCCCTCGCCAAAGCAGGACACTCGCCTTCCTCCCAAGTCTTCCTCTTCtacttcttcctcctccacctctgcCAGTCACTACAAAAGCCCTGTTTCTAAAATCTCTTCTAAGTTCCTCACTGCTGATACTAAAACTAAAGCCACTGCTCAGCTGAAGGGAAAGAAGGGAACAGGGCCCAATGGGACGGCATCCAAACAGAAGGCCGAGCCAAAGAACCAGCCAAAGAAGAATGGAGTCAATGGAACCAATGGGACAGCTTCCCTGAAACGCAACAGCTCCAATGCAGAGCAGTGTAAGTACGGTAAGAACCGCGTGGAGGCGGATGCCAAGCGACTGCAGGGCAGGGAGGAGGAGCTGATGAAGAAGAAGCAGGAGATCAGGAACCACCTGAACGTGCTGAAGAAGGACAGGAAAGAGCTGCGCATGGCCGTGGAAGCTGCTGCCGGCAAACGGTCACTGGCCTCGCTGTCAGAGCGCCTGAAGAAGGTAGAGGAGGACTGCAGGCGGAGGGAGGAGGAGCGGGTGAACCTGGAACTGGAGCTGACGGAGGTGAAGGAGAGCCTGAAGAAAGCCCTGAGCGGTGGGGTCACCCTGGGCCTCACCATCGAACCGAAGGCTGGCTCCTCTGGAGTCCAGtcGCCGGCGATGTTGCGGCGGACCCAGGAGTCTTCTCCCTTCTCCAGCTGCGACACTAGTGACACTGAGTCCTGCTCCCTGCCGGTCAACAGcgcctcgctgctgcgccgtCAGCCGGGCGGCCAAAAGGCCTCGTCCGTCCGGGGACACGTCCTCAGGAAGGCCAAGGAATGGGAGCAGAAGACCGGCACATAATACGCCCAACCCCTCACAGCACACTtactttcatttcttttttctttttaagaaattgtgtatatatttatttaaaactgTCCATACAGTCCAAGATTGTGTTGAGGAGCACACAAGCATAAACAAAGCCAGTTGCTGCTTTTAGTATACTTAGAGTACCGCAACATACGGACCAAGCAACCTTTTTAAACTGTTTGACCAATGAGCATgcttaaccctcgtgttgtctccccgtcgacctgcaacttttagtttttctgagtcaaacttttaaatgaaaaacctttATCAACATTTTGGTCTTCTTTTTCAAAACCTCTGTGGCTTTCCctgatgtttttggcactttttcaaACATTTGTCAACTTTTTCTGAGCCTTTTGAactttttgtgggttttttccCAACTTTTTaaagctatttttta
>XM_039822795.1
TCTATTGTCACCGGTGCGAGAGGAATAGTTATTTTGAACATGGAAAAGGAGAAACACGACAAAGcgaTGGAGGAGCTGGTGTGTGAGCTGCGTCTGTTCCTGGACCTATTGGACCGGGAGTATCTGAGCGCCGGGGTTAGAGAGAAGAAGATGCACCTCTCCAACATCCTGCACAGAGTCCTCTCAGAGAAAGAGCCTTCATTCAAGTCAGAGATGCACAGTGGTCTGCCGGCCCCGCCTCAGATGCCCCTGCCCGAGATACCTCACCCCTGGCTGcCTCCAAACAGCGGCCCTCCCCCTCTGCCCAGCTCCTCTCTACCAGAAGGCTACTATGAGGAAGCAGTTCCTTTAAGTCCTGGAAAGGCTCCTGAATACATCACTGCCAACTATGACTCGGACGCTATGAGCAGCTCCTATGAGTCATAcgacgaggaagaggaggatgggaAGGGCCAGAAGATGCGTCACCAGTGGCCGTCTGCAGAGGCGTCCATGGATCTGGTGAAGGATGCTCGAATCTGTGCGTTCCTTCTACGCAAAAAGCGCTTTGGCCAGTGGACCAAGCTCCTGTGTGTCATCAAAGATAACAAACTGCTGtGTTACAAGTCATCCAAAGACCACACCCCCCAGATGGAGCTGACCCTGTCAGGGTGCAGCATCACTCACATCCCAAAAGACGGCAAGAAGAAGAGGCACGAACTGAAGATCGTCCATCAGGGGGCAGACGCACTGGTGTTGGCTGTGCATAGCAAAGAACAGGCAGAGGAATGGCTCAAGGTGATGAGAGAGGTTTGTGTTAATGGGGGTGTAGACCTGGATGGAGCTGGATCTGGATCACCAGTGCACAAACCTGAACTGGaaaagAAGGCATCGTGTGACAGACCGAGCTCCGACGGTGAAGCCCCTCATGAGAACGGACACAGCGACTGCAAGGACCAAGgaaaaggaaagaagagcTCAAAGTCGGAGCAGAAGACTGGGACGGTGGGGAAGGGAGCAGGGAAGAAGATCACTAAAATCATCGGTCTGGGTAAGAAGAAGCCGTCCACAGATGAGCAGACCTCGTCAGCAGAAGAAGACGTACCCACATGTGGTTACCTGAACGTGTTGTCCAATAACCGTTGGAGGGAGCGCTGGTGCCGCCTGAAAGACAACCAGTTGCTCCTTCATAAGGACCGAGACGACCTGAAGAGCCACATCGCCTCACTGCCCCTCGGAGGCTGCGAGGTCAGCCCCGGCCTGGATCACAAACATCCCTTTGCCTTCCGCCTGCTGCGTAACGGCCAGGAGGTCGCTGTCCTGGAGGCCTCGTCCTCTGAGGAGATGGGGCGCTGGTTGGGGATTTTACTGGCTGAGACCGGCTCCACCACCGACCCTGCCACCCTGCACTACGACTACATTGACGTCGAGACCACCGCCAATGTCATCCAGCTGGCCAAGCAGTCCTTCTGTTTCACCAGTAAGCGTGCTGTCTCTCCTAACCCGTACCTGGACAACCCAGTCAACGGCTACGCCTGCCCCACTGGTATGGCTCTGCACTATGATGATGTACCCATTAACGGAATGGACCCGGAGGCGCAGTACTCCCGTCCCAGCACAGGGGGGCGCCAGCTGAAAGAGGAGCTGCACTATGAGAACACTGAGCTCTATGAGAACATGCCCTCGCCAAAGCAGGACACTCGCCTTCCTCCCAAGTCTTCCTCTTCtacttcttcctcctccacctctgcCAGTCACTACAAAAGCCCTGTTTCTAAAATCTCTTCTAAGTTCCTCACTGCTGATACTAAAACTAAAGCCACTGCTCAGCTGAAGGGAAAGAAGGGAACAGGGCCCAATGGGACGGCATCCAAACAGAAGGCCGAGCCAAAGAACCAGCCAAAGAAGAATGGAGTCAATGGAACCAATGGGACAGCTTCCCTGAAACGCAACAGCTCCAATGCAGAGCAGTGTAAGTACGGTAAGAACCGCGTGGAGGCGGATGCCAAGCGACTGCAGGGCAGGGAGGAGGAGCTGATGAAGAAGAAGCAGGAGATCAGGAACCACCTGAACGTGCTGAAGAAGGACAGGAAAGAGCTGCGCATGGCCGTGGAAGCTGCTGCCGGCAAACGGTCACTGGCCTCGCTGTCAGAGCGCCTGAAGAAGGTAGAGGAGGACTGCAGGCGGAGGGAGGAGGAGCGGGTGAACCTGGAACTGGAGCTGACGGAGGTGAAGGAGAGCCTGAAGAAAGCCCTGAGCGGTGGGGTCACCCTGGGCCTCACCATCGAACCGAAGGCTGGCTCCTCTGGAGTCCAGtcGCCGGCGATGTTGCGGCGGACCCAGGAGTCTTCTCCCTTCTCCAGCTGCGACACTAGTGACACTGAGTCCTGCTCCCTGCCGGTCAACAGcgcctcgctgctgcgccgtCAGCCGGGCGGCCAAAAGGCCTCGTCCGTCCGGGGACACGTCCTCAGGAAGGCCAAGGAATGGGAGCAGAAGACCGGCACATAATACGCCCAACCCCTCACAGCACACTtactttcatttcttttttctttttaagaaattgtgtatatatttatttaaaactgTCCATACAGTCCAAGATTGTGTTGAGGAGCACACAAGCATAAACAAAGCCAGTTGCTGCTTTTAGTATACTTAGAGTACCGCAACATACGGACCAAGCAACCTTTTTAAACTGTTTGACCAATGAGCATgcttaaccctcgtgttgtctccccgtcgacctgcaacttttagtttttctgagtcaaacttttaaatgaaaaacctttATCAACATTTTGGTCTTCTTTTTCAAAACCTCTGTGGCTTTCCctgatgtttttggcactttttcaaACATTTGTCAACTTTTTCTGAGCCTTTTGAactttttgtgggttttttccCAACTTTTTaaagctatttttta
>XM_039822796.1
gagagaaggaaaagggaggaggaggaagatccGGAGAAAAAGTTTGAAAGGAAAAATAGAGAGACGTTTCAGTGGCTCGGGAGGAAAGAATAAGTGGAGGTTGAAACTGAAGGCACAAACGGCTTAAAGtgactctgtctctctgtgtgtgtgtgcggattTTACTGGTACCGGGTAGCCGCTCGCCTCGCCTTTCCTCGCGCCCGCCGCTGAGCGTTGTCGGGCGGGTTAGATGAGTTGGACTTCACGATGAGGAGCGACCCTGTTCTGTTCTCTTCCAGCAGGGcgaTGGAGGAGCTGGTGTGTGAGCTGCGTCTGTTCCTGGACCTATTGGACCGGGAGTATCTGAGCGCCGGGGTTAGAGAGAAGAAGATGCACCTCTCCAACATCCTGCACAGAGTCCTCTCAGAGAAAGAGCCTTCATTCAAGTCAGAGATGCACAGTGGTCTGCCGGCCCCGCCTCAGATGCCCCTGCCCGAGATACCTCACCCCTGGCTGcCTCCAAACAGCGGCCCTCCCCCTCTGCCCAGCTCCTCTCTACCAGAAGGCTACTATGAGGAAGCAGTTCCTTTAAGTCCTGGAAAGGCTCCTGAATACATCACTGCCAACTATGACTCGGACGCTATGAGCAGCTCCTATGAGTCATAcgacgaggaagaggaggatgggaAGGGCCAGAAGATGCGTCACCAGTGGCCGTCTGCAGAGGCGTCCATGGATCTGGTGAAGGATGCTCGAATCTGTGCGTTCCTTCTACGCAAAAAGCGCTTTGGCCAGTGGACCAAGCTCCTGTGTGTCATCAAAGATAACAAACTGCTGtGTTACAAGTCATCCAAAGACCACACCCCCCAGATGGAGCTGACCCTGTCAGGGTGCAGCATCACTCACATCCCAAAAGACGGCAAGAAGAAGAGGCACGAACTGAAGATCGTCCATCAGGGGGCAGACGCACTGGTGTTGGCTGTGCATAGCAAAGAACAGGCAGAGGAATGGCTCAAGGTGATGAGAGAGGTTTGTGTTAATGGGGGTGTAGACCTGGATGGAGCTGGATCTGGATCACCAGTGCACAAACCTGAACTGGaaaagAAGGCATCGTGTGACAGACCGAGCTCCGACGGTGAAGCCCCTCATGAGAACGGACACAGCGACTGCAAGGACCAAGgaaaaggaaagaagagcTCAAAGTCGGAGCAGAAGACTGGGACGGTGGGGAAGGGAGCAGGGAAGAAGATCACTAAAATCATCGGTCTGGGTAAGAAGAAGCCGTCCACAGATGAGCAGACCTCGTCAGCAGAAGAAGACGTACCCACATGTGGTTACCTGAACGTGTTGTCCAATAACCGTTGGAGGGAGCGCTGGTGCCGCCTGAAAGACAACCAGTTGCTCCTTCATAAGGACCGAGACGACCTGAAGAGCCACATCGCCTCACTGCCCCTCGGAGGCTGCGAGGTCAGCCCCGGCCTGGATCACAAACATCCCTTTGCCTTCCGCCTGCTGCGTAACGGCCAGGAGGTCGCTGTCCTGGAGGCCTCGTCCTCTGAGGAGATGGGGCGCTGGTTGGGGATTTTACTGGCTGAGACCGGCTCCACCACCGACCCTGCCACCCTGCACTACGACTACATTGACGTCGAGACCACCGCCAATGTCATCCAGCTGGCCAAGCAGTCCTTCTGTTTCACCAGTAAGCGTGCTGTCTCTCCTAACCCGTACCTGGACAACCCAGTCAACGGCTACGCCTGCCCCACTGGTATGGCTCTGCACTATGATGATGTACCCATTAACGGAATGCTGAAGGGAAAGAAGGGAACAGGGCCCAATGGGACGGCATCCAAACAGAAGGCCGAGCCAAAGAACCAGCCAAAGAAGAATGGAGTCAATGGAACCAATGGGACAGCTTCCCTGAAACGCAACAGCTCCAATGCAGAGCAGTGTAAGTACGGTAAGAACCGCGTGGAGGCGGATGCCAAGCGACTGCAGGGCAGGGAGGAGGAGCTGATGAAGAAGAAGCAGGAGATCAGGAACCACCTGAACGTGCTGAAGAAGGACAGGAAAGAGCTGCGCATGGCCGTGGAAGCTGCTGCCGGCAAACGGTCACTGGCCTCGCTGTCAGAGCGCCTGAAGAAGGTAGAGGAGGACTGCAGGCGGAGGGAGGAGGAGCGGGTGAACCTGGAACTGGAGCTGACGGAGGTGAAGGAGAGCCTGAAGAAAGCCCTGAGCGGTGGGGTCACCCTGGGCCTCACCATCGAACCGAAGGCTGGCTCCTCTGGAGTCCAGtcGCCGGCGATGTTGCGGCGGACCCAGGAGTCTTCTCCCTTCTCCAGCTGCGACACTAGTGACACTGAGTCCTGCTCCCTGCCGGTCAACAGcgcctcgctgctgcgccgtCAGCCGGGCGGCCAAAAGGCCTCGTCCGTCCGGGGACACGTCCTCAGGAAGGCCAAGGAATGGGAGCAGAAGACCGGCACATAATACGCCCAACCCCTCACAGCACACTtactttcatttcttttttctttttaagaaattgtgtatatatttatttaaaactgTCCATACAGTCCAAGATTGTGTTGAGGAGCACACAAGCATAAACAAAGCCAGTTGCTGCTTTTAGTATACTTAGAGTACCGCAACATACGGACCAAGCAACCTTTTTAAACTGTTTGACCAATGAGCATgcttaaccctcgtgttgtctccccgtcgacctgcaacttttagtttttctgagtcaaacttttaaatgaaaaacctttATCAACATTTTGGTCTTCTTTTTCAAAACCTCTGTGGCTTTCCctgatgtttttggcactttttcaaACATTTGTCAACTTTTTCTGAGCCTTTTGAactttttgtgggttttttccCAACTTTTTaaagctatttttta

Function

symbol description
afap1 Predicted to act upstream of or within regulation of cytoskeleton organization and regulation of signal transduction. Is expressed in brain. Human ortholog(s) of this gene implicated in open-angle glaucoma. Orthologous to human AFAP1 (actin filament associated protein 1).

NR:

description
actin filament-associated protein 1 isoform X1

GO: NA

KEGG:

id description
K18616 AFAP1; actin filament associated protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039822794.1 True 3141 mRNA 0.54 18 3005172 3108934
XM_039822795.1 False 2917 mRNA 0.53 18 2956348 3108934
XM_039822796.1 False 2896 mRNA 0.54 17 3005174 3108934

Neighbor

gene id symbol gene type direction distance location
zcchc4 LOC104953644,LOC104953641 coding upstream 132333 2808900 ~ 2824015 (+)
mad2l1 mad2l1,LOC102790739,LOC103155071,LOC106941438 coding upstream 287217 2664689 ~ 2669131 (+)
ank2b ank2,LOC103361685,LOC107384730 coding upstream 506106 2278934 ~ 2450242 (+)
LOC120572444 NA coding upstream 745789 2210208 ~ 2210559 (+)
LOC120572142 NA coding upstream 853976 2038970 ~ 2102372 (+)
hacd4 hacd4 coding downstream 47860 3156794 ~ 3167756 (+)
LOC120572274 NA coding downstream 353487 3462421 ~ 3470210 (+)
lrch4 lrch4 coding downstream 584104 3693038 ~ 3787295 (+)
LOC120573426 NA coding downstream 1040984 4149918 ~ 4158154 (+)
rwdd rwdd4 coding downstream 1096993 4205927 ~ 4210355 (+)
G140763 NA non-coding upstream 130481 2824674 ~ 2825867 (+)
G140746 NA non-coding upstream 158826 2797252 ~ 2797522 (+)
G140741 NA non-coding upstream 226241 2729774 ~ 2730107 (+)
G140740 pde5a non-coding upstream 230691 2710706 ~ 2725657 (+)
G140738 NA non-coding upstream 271193 2684519 ~ 2685155 (+)
G140770 NA non-coding downstream 180 3109114 ~ 3112461 (+)
G140820 NA non-coding downstream 103709 3212643 ~ 3213025 (+)
G140836 NA non-coding downstream 326526 3435460 ~ 3435678 (+)
G140837 NA non-coding downstream 326918 3435852 ~ 3436138 (+)
G140839 NA non-coding downstream 328603 3437537 ~ 3437984 (+)
ablim2 ablim2 other upstream 1658 2828052 ~ 2954690 (+)
G140613 NA other upstream 896981 2055439 ~ 2059367 (+)
G140594 NA other upstream 924123 2022592 ~ 2032225 (+)
G140582 NA other upstream 925721 1929623 ~ 2030627 (+)
frem1a frem1,LOC106908230,LOC105925506,LOC101079287,LOC108244244 other upstream 1230880 1677210 ~ 1725468 (+)
mllt3 mllt3 other downstream 147579 3256513 ~ 3433803 (+)
zgc:112271 LOC103361642,LOC104959592,LOC100706616,LOC104935668 other downstream 1204217 4313151 ~ 4315545 (+)
G141060 men1 other downstream 1331704 4440638 ~ 4444947 (+)
G141063 NA other downstream 1374758 4483692 ~ 4487607 (+)
trnaw-cca_15 NA other downstream 3128069 6237003 ~ 6237074 (+)

Expression


Co-expression Network