RNA id: TU190024


Basic Information

Item Value
RNA id TU190024
length 338
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G140896
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 3523111 ~ 3579347 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ccctctctccctgtctctctctttttctctctctctccttctctctccatccctccttctccctccatctctctctgtctctctctctctttttctctctctctccttctttctccatcccgccttctccctccctctctatctctctgtttctcttttctttctctctctctccctgtttctctctcttttctctctctctgtcctctctccatccctccttctccctccatctctctctgtctctctctctctttttctctctctctccttctctctcatcccgccttctccctccctctctccctgtctctttctctttttctctctctctcctc

Function

GO:

id name namespace
GO:0015467 G-protein activated inward rectifier potassium channel activity molecular_function
GO:0099094 ligand-gated cation channel activity molecular_function
GO:0022832 voltage-gated channel activity molecular_function
GO:0046873 metal ion transmembrane transporter activity molecular_function
GO:0022843 voltage-gated cation channel activity molecular_function
GO:0005242 inward rectifier potassium channel activity molecular_function
GO:0005244 voltage-gated ion channel activity molecular_function
GO:0005249 voltage-gated potassium channel activity molecular_function
GO:0005261 cation channel activity molecular_function
GO:0005267 potassium channel activity molecular_function
GO:0015079 potassium ion transmembrane transporter activity molecular_function

KEGG:

id description
ko04723 Retrograde endocannabinoid signaling
ko04713 Circadian entrainment

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190023 lncRNA upstream 8706 3514176 ~ 3514405 (+) True G140895
TU190011 lncRNA upstream 60928 3461858 ~ 3462183 (+) True G140884
TU189954 lncRNA upstream 65725 3455522 ~ 3457386 (+) True G140832
TU189955 lncRNA upstream 65725 3455522 ~ 3457386 (+) False G140832
TU189963 lncRNA upstream 85127 3437537 ~ 3437984 (+) True G140839
TU190062 lncRNA downstream 94744 3674091 ~ 3674468 (+) True G140925
TU190222 lncRNA downstream 751509 4330856 ~ 4331987 (+) True G141044
TU190223 lncRNA downstream 752955 4332302 ~ 4342306 (+) True G141045
TU190227 lncRNA downstream 759186 4338533 ~ 4339963 (+) False G141045
TU190239 lncRNA downstream 779574 4358921 ~ 4359458 (+) True G141054
XM_039821510.1 mRNA upstream 52901 3462421 ~ 3470210 (+) True LOC120572274
XM_039823322.1 mRNA upstream 89408 3256513 ~ 3433703 (+) True mllt3
XM_039823057.1 mRNA upstream 355355 3156794 ~ 3167756 (+) True hacd4
XM_039822794.1 mRNA upstream 414177 3005172 ~ 3108934 (+) True afap1
XM_039822048.1 mRNA downstream 113691 3693038 ~ 3787295 (+) False lrch4
XM_039822047.1 mRNA downstream 113691 3693038 ~ 3784484 (+) True lrch4
XM_039823149.1 mRNA downstream 570571 4149918 ~ 4158154 (+) True LOC120573426
XM_039823453.1 mRNA downstream 626580 4205927 ~ 4210355 (+) True rwdd
XM_039821460.1 mRNA downstream 656944 4236291 ~ 4252842 (+) True LOC120572240
TU189948 other upstream 218480 3256551 ~ 3304631 (+) False mllt3
TU189860 other upstream 619540 2828052 ~ 2903571 (+) False ablim2
TU189858 other upstream 619540 2857755 ~ 2903571 (+) False ablim2
TU189672 other upstream 1463744 2055439 ~ 2059367 (+) True G140613
TU189616 other upstream 1490886 2022592 ~ 2032225 (+) True G140594
TU190185 other downstream 733812 4313159 ~ 4315538 (+) False zgc:112271
TU190186 other downstream 734019 4313366 ~ 4315538 (+) False zgc:112271
TU190255 other downstream 861291 4440638 ~ 4444947 (+) True G141060
TU190258 other downstream 904345 4483692 ~ 4487607 (+) True G141063
unassigned_transcript_682 other downstream 2449293 6028640 ~ 6028713 (+) True trnat-agu_5

Expression Profile