RNA id: TU190023


Basic Information

Item Value
RNA id TU190023
length 230
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G140895
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 3514176 ~ 3514405 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttaattccaagcaaaacttctcaagtatcaaacaaaaaacactaactcaagcaaaaaaagtttcacctcaaaggtaaaacttaaaacttgcaaacaaaacatttgtgtagttgtaaactattggtcttatatttgtttgatattatgtccttttgtttacagttccctctgcttctttctcaatgatcagtcttttgctctctccatcacgtttgcagttttgctcccag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190011 lncRNA upstream 51993 3461858 ~ 3462183 (+) True G140884
TU189954 lncRNA upstream 56790 3455522 ~ 3457386 (+) True G140832
TU189955 lncRNA upstream 56790 3455522 ~ 3457386 (+) False G140832
TU189963 lncRNA upstream 76192 3437537 ~ 3437984 (+) True G140839
TU189961 lncRNA upstream 78038 3435852 ~ 3436138 (+) True G140837
TU190024 lncRNA downstream 8706 3523111 ~ 3579347 (+) True G140896
TU190062 lncRNA downstream 159686 3674091 ~ 3674468 (+) True G140925
TU190222 lncRNA downstream 816451 4330856 ~ 4331987 (+) True G141044
TU190223 lncRNA downstream 817897 4332302 ~ 4342306 (+) True G141045
TU190227 lncRNA downstream 824128 4338533 ~ 4339963 (+) False G141045
XM_039821510.1 mRNA upstream 43966 3462421 ~ 3470210 (+) True LOC120572274
XM_039823322.1 mRNA upstream 80473 3256513 ~ 3433703 (+) True mllt3
XM_039823057.1 mRNA upstream 346420 3156794 ~ 3167756 (+) True hacd4
XM_039822795.1 mRNA upstream 405242 2956348 ~ 3108934 (+) False afap1
XM_039822048.1 mRNA downstream 178633 3693038 ~ 3787295 (+) False lrch4
XM_039822047.1 mRNA downstream 178633 3693038 ~ 3784484 (+) True lrch4
XM_039823149.1 mRNA downstream 635513 4149918 ~ 4158154 (+) True LOC120573426
XM_039823453.1 mRNA downstream 691522 4205927 ~ 4210355 (+) True rwdd
XM_039821460.1 mRNA downstream 721886 4236291 ~ 4252842 (+) True LOC120572240
TU189948 other upstream 209545 3256551 ~ 3304631 (+) False mllt3
TU189860 other upstream 610605 2828052 ~ 2903571 (+) False ablim2
TU189858 other upstream 610605 2857755 ~ 2903571 (+) False ablim2
TU189672 other upstream 1454809 2055439 ~ 2059367 (+) True G140613
TU189616 other upstream 1481951 2022592 ~ 2032225 (+) True G140594
TU190185 other downstream 798754 4313159 ~ 4315538 (+) False zgc:112271
TU190186 other downstream 798961 4313366 ~ 4315538 (+) False zgc:112271
TU190255 other downstream 926233 4440638 ~ 4444947 (+) True G141060
TU190258 other downstream 969287 4483692 ~ 4487607 (+) True G141063
unassigned_transcript_682 other downstream 2514235 6028640 ~ 6028713 (+) True trnat-agu_5

Expression Profile