RNA id: XM_039822247.1


Basic Information

Item Value
RNA id XM_039822247.1
length 2496
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC120572798
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 34301990 ~ 34322529 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTTGGATGCCGGCTGCCGTAAAatcccaaagaagaagaagaggaaaccGGAAGTCTCGTTGTTTGACTGGGATGTGTGGCTGGCGGCGGGATAGCTGTGCTGTTTGTTATTAGTGAGTTTGAAGAAGACAGAGCTCCAGGAGCCCTCAGTAGACGTCAAGCTGGCGACCGTAGCAGGAAAGAAGGGCAAcaaggctgaggaggaggagcagcctgcagcaactcctgcagcagcagtaaaggaggaagaggaggaggaggtacaGCAGCCTCTAGCACCTCCTGCAGTGGCAGTGaagaaggaagaagaggagtatgtggtggagaaggttttggaccgcagagtggtgaagggaagagtagagtttctgctgaaatggaagGCGTTCTCAGATGAGGATAACACATGGGAGCCGGAAGACAACCTGGACTGCCCCGACCTTATCGCTgagtacatgcagaaacacaaggagaaggaggagaagaagaaggagggaaagaggaaagttgtcagtgaggCCTCGGGAGACTCAGAGGCGCgagggagcaagaggaagaaggTGGAGaaacggggaggaggagagggacccaCATGTCAGCACTTtcaacactgtgacaaatcTTTTACAACATCTGTATATTTAAACATTCATCAGAGATTTCACACTGGACAGAATctacacagctgtgatcaatgtggggcagctttcacacaacaggGTACCCTAAAcagacatcaacgcattcacaagGGAGAGatgtacagctgtgatcaatgtggggctgCTTTCACACAACAGGGTACCCTAAAAagccatcaacgcattcacactggtgagaagccttacagctgtgatcaatgtggggcagctttcacacgacAGGATACTCTAAGAAAACATCAAcgccttcacactggagagaaaccTTACatctgtgatcaatgtggggcagcttttaCACAACGGAGTAGCCTAAAAAGCCATCAATGCATTCACGCTGGACAGAAGCCGTACAgatgtgatcaatgtggggcagctttcacacaacagaGTCACCTAAAATTACATCAACCCGTTCACTCTGGAAATAAACCGTACAACTGTGATCAGTGTGGGGCTGCTTTCACACAACAGGGTACCCTAAAcagacatcaacgcattcacaagGGAGAGatgtacagctgtgatcaatgtggggcagctttcacacaacagaGTACCCTAAAAagccatcaacgcattcacactggtgagaagccttacagctgtgatcaatgtggggcagctttcacacgacAGGATACCCTAAGAAAACATCAAcgccttcacactggagagaaaccTTACatctgtgatcaatgtggggcagcttttaCACAACGGAGTAGCCTAAAAAGCCATcaatgcattcacactggaCAGAAGCCGTACAgatgtgatcaatgtggggcagctttcgcACGACAGGATACCCTAACaaaacatcaacgcattcacactggagagaaaccttacagctgtgattagtgtggggcagctttcacacaaccTGGTACCCTGAATAGACAACGCATTCACAGGGGAGAGatgtacagctgtgatcaatgtggggcagctttttAACAACAGAGTACCCTAAAAAGCcatcaacacattcacactggagagaaaccTTACAGAACAATGTGGAAAAACTTTTTCTCAAACCAGTAATCTTAAAAGACACCACCAGCGTCTTCACACTGCCTCGTAGTCAACATGTTTCAGAGCCAAGCGGTTTCCttctgcctcctcctcatgccctgatagctgtgttgttatattctgatcttctctccacattgaGGGCTGACCAGCAGTAACTTTATCTTCTGAACAGCATGTATGTTatcctggctacaactacatatTACGCTCCCTCCCTTGGAAGGGATTAATTCCGGTCAAAATTAGCTTTTATTTCTGTAATAACATATTTTGAGTTCAGCGTTCAACTGCTAGGGCTATGTAACTAACGTTGCAACGAAGGagtatttgtttttcaaaaaacaaaatccCATTACTGTGTACTAACGTAATGTCAAATTGCTGAAATATTTAGTCTATTGTCCCTTAAGATGAAGAAAAGAAGCAAATTGTCATAACTGGGAAGCTTAATCAGATTTTCATAACTTGTAAGCTTAATCAGAACATGTCTGCTGCTGCTTAAAATGATGAACAGTTAGGGTTTAAACTGCATCTGTGCCGCTGCCATTAGGGACGAACAACTGATCTTAAAGACTCTGCTTTTGGATGTTCATGTAAAGGAAATGCTAAAAAAAGTAACATGGAATAAAATTTCACAgaggaaaaatgtgttttacaataTTATACGATTATGAAAGTGTTGCATTTAATATCACAAAAGGTAACATTAATCCTTTTTTAAGTTAACAGTAAGTTAAATTACTGTCCTGATACTGAaataaagggatatttcaccgttggaaagatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201369 lncRNA downstream 100135 34190239 ~ 34201855 (-) False LOC120572826
TU201365 lncRNA downstream 126143 34082462 ~ 34175847 (-) True LOC120572812
XR_005641522.1 lncRNA upstream 45592 34368121 ~ 34376133 (-) True LOC120572958
TU201458 lncRNA upstream 113482 34436011 ~ 34445134 (-) True G148964
TU201501 lncRNA upstream 231479 34554008 ~ 34554522 (-) True G149001
TU201505 lncRNA upstream 235073 34557602 ~ 34560257 (-) True G149005
XR_005641593.1 lncRNA upstream 247908 34570437 ~ 34572007 (-) True LOC120573019
XM_039822406.1 mRNA downstream 7992 34292360 ~ 34293998 (-) True LOC120572892
XM_039822296.1 mRNA downstream 108395 34046820 ~ 34193595 (-) False LOC120572826
XM_039822293.1 mRNA downstream 108398 34046237 ~ 34193592 (-) False LOC120572826
XM_039822267.1 mRNA downstream 127039 34082964 ~ 34174951 (-) False LOC120572812
XM_039822295.1 mRNA downstream 226476 34046237 ~ 34075514 (-) False LOC120572826
XM_039822371.1 mRNA upstream 21368 34343897 ~ 34348411 (-) True LOC120572863
XM_039822419.1 mRNA upstream 28726 34351255 ~ 34352807 (-) True LOC120572901
XM_039821945.1 mRNA upstream 90751 34413280 ~ 34421997 (-) False LOC120572624
XM_039822235.1 mRNA upstream 355682 34678211 ~ 34767886 (-) False LOC120572793
XM_039822236.1 mRNA upstream 355682 34678211 ~ 34749411 (-) True LOC120572793
XR_005641496.1 other downstream 125945 34165127 ~ 34176045 (-) False LOC120572812
TU201394 other downstream 280911 34020572 ~ 34021079 (-) True G148918
TU201327 other downstream 512615 33788595 ~ 33789375 (-) False G148879
XR_005641508.1 other upstream 29503 34352032 ~ 34353438 (-) False LOC120572901
TU201452 other upstream 90751 34413280 ~ 34419912 (-) False LOC120572624
TU201453 other upstream 90751 34413280 ~ 34419912 (-) True LOC120572624
TU201571 other upstream 502119 34824648 ~ 34831378 (-) True G149062
TU201582 other upstream 532579 34855108 ~ 34860914 (-) False LOC120572844

Expression Profile