RNA id: XM_039822267.1


Basic Information

Item Value
RNA id XM_039822267.1
length 1482
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC120572812
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 34082462 ~ 34176045 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGgttttccaaaaaaaagtggtgggtacAAAAATGAGTCATGACGAATATAGCCTTTGTATGTACGCGTCCGCCTGTGAAGTGTCGGTGGCAAAGGTGGGTGGTAGCTtatttactgtctatgggtggTAGCTTATTTACTGTCAATGTGTGGTAGCTtatttactgtctatgggtggTAGCTTATTTACTGTCAATGTGTGGTAGCTtatttactgtctatgggtggTAGCTTATTTACTGTCAATGTGTGGTAGCTtatttactgtctatgggtggTAGCGTTGAGgaaagtagaagggcgtgacttcaaCAGTTTCTGGATGCAGAGAATGCAGCTGGTCGCCTCTCTGTCAGCGCTCATGGCTCCTTTGATACTCCTGTTGATCCTTCTGTCTGGAGCAGCTTCTGaGCTGATTGTGGTACCAGTGCACCCTGGAGATGATGTCACTCTGCCATGTCAGGCTGCTGGTTCCTCCATCAGAGCTGTAGAGTGGACCAGACCTGACCTGGAGCCATATATCGTCCTCTTGTACAGAGATGGACACTTGGAGACAGACAACCAGCATCCATCCTTTAAGGACAGGGTggagctggtggacagagaCCTGAAGGACGGAGACGTGTCTTTAACTCTGAAGAATGTGAGCAGACACGACGCTGGAACATACGAGTGTCGAGTTAAAACCGATGATTCAACACTTACAAAGAGAGACTCCAACTctgagccaatcagaatcatccATCTGCAGATTACAGAGCCAGCAGACTTACCTGTGGTAACAGTGCACCCTGGAGATAATGTCATTCTGCCATGTTGGACTGCTGATTCCTTAATCAGAGCTGCAGAATGGAGCAGACCTGACCAGGAGCAAGAGTATGTCCTTTTCTACAGAGATGGGCACCTGGATCCAACCTACCAGCATCCATCCTTTAAGGACAGGGTggagctggtggacagagatCTGAAGGACGGAGACGTGTCTTTAATTCTGAAGAATGTGAGCAGCATCGACGCTGGAACATACGAGTGTCGGGTTGAACCAGCTGGTTCCAGACGTAGAAAGAGAGCCATCATCGACTCTGAGCCAATCAGAATCTTCCGTCTGCAGGTTACAGAGCCAGgTTCCGATGATAGAAACCTCTCTCCTCTAGGACTATACATTGGACTGGCAGCAGGTGTTCTGGTTCTTGTAGCTGCTGCAGTGGGTGGTGTCCTGATGTTTAAAAGATGTAACAACAAGAGATCAGGAGAACCTGCTGCTGATGAAGGATCTGGCGATCTGACAACTTGTAAAGAGTATTACATATAgacaatatataaatacaggTATACAGATGAGTAGGGCTGAAACTattcctcgaataattcgattacaaaaaatcctcgatgcaaaatgagttgcctcgaagcttcgttaaatcaatgttaccaacgttgtatcgctgacgaacggtgtttccgcacggagcattattactg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201362 lncRNA downstream 2315 34014759 ~ 34080649 (-) False G148892
TU201359 lncRNA downstream 2315 34015515 ~ 34080649 (-) False G148892
TU201355 lncRNA downstream 28857 34015515 ~ 34054107 (-) False G148892
TU201352 lncRNA downstream 75531 33997864 ~ 34007433 (-) False G148892
TU201393 lncRNA downstream 78739 33986395 ~ 34004225 (-) True G148917
TU201369 lncRNA upstream 15288 34190239 ~ 34201855 (-) False LOC120572826
TU201423 lncRNA upstream 93578 34268529 ~ 34650586 (-) True G148945
TU201424 lncRNA upstream 93578 34268529 ~ 34650586 (-) False G148945
XR_005641522.1 lncRNA upstream 193170 34368121 ~ 34376133 (-) True LOC120572958
TU201458 lncRNA upstream 261060 34436011 ~ 34445134 (-) True G148964
XM_039822295.1 mRNA downstream 7450 34046237 ~ 34075514 (-) False LOC120572826
XM_039822294.1 mRNA downstream 30050 34046237 ~ 34052914 (-) True LOC120572826
XM_039821944.1 mRNA downstream 54652 34008766 ~ 34028312 (-) True LOC120572621
XM_039822314.1 mRNA downstream 76075 33997053 ~ 34006889 (-) True LOC120572834
XM_039822219.1 mRNA downstream 94925 33980395 ~ 33988039 (-) False LOC120572783
XM_039822406.1 mRNA upstream 117409 34292360 ~ 34293998 (-) True LOC120572892
XM_039822247.1 mRNA upstream 127039 34301990 ~ 34322529 (-) True LOC120572798
XM_039822371.1 mRNA upstream 168946 34343897 ~ 34348411 (-) True LOC120572863
XM_039822419.1 mRNA upstream 176304 34351255 ~ 34352807 (-) True LOC120572901
XM_039821945.1 mRNA upstream 238329 34413280 ~ 34421997 (-) False LOC120572624
TU201394 other downstream 61885 34020572 ~ 34021079 (-) True G148918
TU201330 other downstream 293589 33724665 ~ 33789375 (-) False G148879
XR_005641508.1 other upstream 177081 34352032 ~ 34353438 (-) False LOC120572901
TU201452 other upstream 238329 34413280 ~ 34419912 (-) False LOC120572624
TU201453 other upstream 238329 34413280 ~ 34419912 (-) True LOC120572624
TU201571 other upstream 649697 34824648 ~ 34831378 (-) True G149062
TU201582 other upstream 680157 34855108 ~ 34860914 (-) False LOC120572844

Expression Profile