RNA id: XM_039823120.1


Basic Information

Item Value
RNA id XM_039823120.1
length 1229
RNA type mRNA
GC content 0.48
exon number 6
gene id LOC120573402
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 38285892 ~ 38338759 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACAGCAGATGGATTTATGGAATATGCTGTGGACCGTTGTGTGTTTAACTCGTCTGATCTGAACGACATCGAGTACATCTACTCTCATTACTACAACATGGAGGAGTACGTCAGGTTCAGCAGCAGTGTGGGGAAGTATGTCGGATACACTGAGTACGGAGTGAAGAACGCAGAACGCTGGAACAAAGATCCTTCAGAACTGGCTCGGAGGAAAGCTGCGAAGGAGGCGTActgcaaacacaacattgaTATTGACTACCAGGTTGCGCTGACTAAATCAGCTGAGCCGTATGTCCGACTGAGCTCTACGGAGCCCTCTGGTGGTAAACATTCGGCCATGTTGGTCTGCAGCGTCTACGACTTCTACCCCAAACACATCAGAGTCAAGTGGACCAGAGACGGACAGGAAGTCACCTCTGATGTCACTTCCACTGATGAGCTGGCAGACGGTGATTGGTACTACCAGATCCACTCTCACCTGGAGTACACGCCCAGGTCTGGAGAGAAGATCTCCTGTATGGTGGAACACGCCAGCCTGAAAGAACCTCTGATCACTCACTGGGACCCGTCCATGCCTGAGTCTGAGAAGAACAAGATTGCCATCGGAGCCTCAGGACTGATCCTGGGTCTGGTCTTATCTCTGGCTGGATTCATCTACTACAAGAGGAAGGCCCGAGGACGGATTCTGGTTCCCAGTAGCTGATTCTGGACCTGGTTCTGGTCCTGTAGCTGTTTGTCAGATGGAATAAAAAGCAGCAGCTGCTTCAACCTGCTTCGTGTGTTTCAGCTCAGCAGACTGTCGGTCCTGGACCATCTGCTGGACCGCCTCAACTCCTGATTCTCTGATGATCTGGACTCTGATACTCAGCTGGTCTGAACCCTGGTCCAGGACTGTGGTGTTAACTCTGATGGTCCTGGACCAGGTCTGAACCTGATCCAGGACTGTGGTGTTACTCTGACGGTCCTGGACCAGGTTTAGTCTGGACTCTGGTGTATCCCAGCTGGATCTGAACTCTGCTTCATCTACATGTGATATGATTCTTTCTGTGTGAAATCAATATTTTTCAGCCACTTATATCCACCAACGTAATAACTCTGGTCTTTAAATCAGATATAATCAGTTATTTGAATGATTTGGGGGCTGGCAGGTTGTGTGATTGTtagatttatatatttttactggAGTGAAACATTTTCTAACCCTAATAAACTGATCAGAAAACTCTCTGA

Function

GO:

id name namespace
GO:0002504 antigen processing and presentation of peptide or polysaccharide antigen via MHC class II biological_process
GO:0006955 immune response biological_process
GO:0042613 MHC class II protein complex cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641710.1 lncRNA downstream 142601 38137603 ~ 38143291 (-) False LOC120573409
TU202977 lncRNA upstream 28631 38322571 ~ 38323111 (-) True G150021
TU202978 lncRNA upstream 28631 38322571 ~ 38323111 (-) False G150021
TU202986 lncRNA upstream 53625 38347565 ~ 38347971 (-) True G150029
TU202987 lncRNA upstream 53625 38347565 ~ 38347971 (-) False G150029
TU202988 lncRNA upstream 53625 38347565 ~ 38347971 (-) False G150029
XM_039823129.1 mRNA downstream 83548 38199809 ~ 38202344 (-) True LOC120573407
XM_039823111.1 mRNA downstream 106413 38170079 ~ 38179479 (-) False LOC120573395
XM_039823108.1 mRNA downstream 115229 38155598 ~ 38170663 (-) False LOC120573395
XM_039823104.1 mRNA upstream 181823 38475763 ~ 38487369 (-) True LOC120573391
XM_039823105.1 mRNA upstream 181823 38475763 ~ 38485653 (-) False LOC120573391
XM_039821971.1 mRNA upstream 193154 38487094 ~ 38505625 (-) True LOC120572653
XM_039823118.1 mRNA upstream 268022 38561962 ~ 38565649 (-) True LOC120573401
XM_039821972.1 mRNA upstream 312349 38606289 ~ 38627304 (-) True LOC120572654
TU202965 other downstream 7645 38246640 ~ 38278247 (-) True G150012
XR_005641707.1 other downstream 106412 38169493 ~ 38179480 (-) False LOC120573395
TU203204 other upstream 194028 38487968 ~ 38541170 (-) False LOC120572653
TU203205 other upstream 194028 38487968 ~ 38505641 (-) False LOC120572653
TU203212 other upstream 234977 38528917 ~ 38533300 (-) True G150174
TU203219 other upstream 267329 38561269 ~ 38633052 (-) False LOC120572655
TU203233 other upstream 317715 38611655 ~ 38689593 (-) True G150192

Expression Profile