RNA id: unassigned_transcript_826


Basic Information

Item Value
RNA id unassigned_transcript_826
length 405
RNA type V_gene_segment
GC content 0.46
exon number 3
gene id LOC120574397
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 9758667 ~ 9771134 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TACACACTGTAGACTGGACAGAGACAACTGGCTTTAACAATGATCAGACCTGATTATTTGGTTGTTTTTCTCATCCTGTCATTTAACTGGGCAGGTACTGAGGGTCAAACACTGACTGAGTCTGAACCAGTggttaaaagacctggagaatcccacagaCTGACCTGCACATATTCTGGGTTTGGTGGTAATATTGATAGCGCTTGGATCAGACAGGCTGctggaaaaggactggaatGGATCGCTTACATCAGCAGTGGCAGTGGCAGCATCtactactctcagtcagtcaaaggccggtttaccatctccagagaaaacagcagacagcaggtgtatctgcagatgaacagtctgaagactgaagattctgctgtttattattgtgctcgagaGCCACAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207737 lncRNA upstream 43605 9673498 ~ 9715062 (+) False G153340
TU207736 lncRNA upstream 70838 9658348 ~ 9687829 (+) True G153340
TU207761 lncRNA upstream 80590 9654323 ~ 9678077 (+) True G153359
TU207740 lncRNA upstream 120698 9636829 ~ 9637969 (+) True G153341
TU207745 lncRNA upstream 215733 9542179 ~ 9542934 (+) True G153345
XR_005641881.1 lncRNA downstream 91851 9862985 ~ 9864890 (+) True LOC120574665
TU207833 lncRNA downstream 101187 9872321 ~ 9878863 (+) True G153415
TU207847 lncRNA downstream 150418 9921552 ~ 9935038 (+) True G153423
TU207848 lncRNA downstream 155004 9926138 ~ 9926485 (+) True G153424
XR_005641879.1 lncRNA downstream 176437 9947571 ~ 9950872 (+) False LOC120574664
XM_039825618.1 mRNA upstream 716622 9036901 ~ 9042045 (+) True asphd1
XM_039823792.1 mRNA upstream 789622 8959248 ~ 8969045 (+) False eps8l1a
XM_039824667.1 mRNA downstream 108168 9879302 ~ 9887967 (+) True LOC120574409
XM_039824673.1 mRNA downstream 167829 9938963 ~ 9939633 (+) True LOC120574415
XM_039824991.1 mRNA downstream 169389 9940523 ~ 10027725 (+) False LOC120574577
XM_039824992.1 mRNA downstream 169755 9940889 ~ 10027725 (+) False LOC120574577
XM_039824993.1 mRNA downstream 221655 9992789 ~ 10027725 (+) False LOC120574577
unassigned_transcript_825 other upstream 1759 9756489 ~ 9756908 (+) True LOC120574655
unassigned_transcript_824 other upstream 4404 9753717 ~ 9754263 (+) True LOC120574396
unassigned_transcript_823 other upstream 6066 9751939 ~ 9752601 (+) True LOC120574628
TU207814 other upstream 6109 9752048 ~ 9752558 (+) False LOC120574628
unassigned_transcript_822 other upstream 7611 9750618 ~ 9751056 (+) True LOC120574616
TU207811 other downstream 12698 9783832 ~ 9909154 (+) True G153394
TU207802 other downstream 18072 9789206 ~ 9789772 (+) True G153385
TU207810 other downstream 19355 9790489 ~ 9790934 (+) True G153393
TU207813 other downstream 29598 9800732 ~ 9840628 (+) True LOC120574632
TU207831 other downstream 64422 9835556 ~ 9836070 (+) False LOC120574404

Expression Profile