RNA id: TU207825


Basic Information

Item Value
RNA id TU207825
length 396
RNA type TUCP
GC content 0.45
exon number 2
gene id G153408
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 9765329 ~ 9765824 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCAGATCAGAGCACTGAACGACGACTGCTTCTCCCAGAATGGAAAATACCATTATCTGGAGTTTATTAATTGTAGTTACTATTCATGGAGTTTGGAGTGAGATCAAACTGGACCAGTCTCCCTCTGAGGTGAAAAGACCTGGAGAGACAGTGAAGATGTCATGTATCATATCTGGTTATAGCATGACAAGCTACAATATTCACTGGATAAGACAAAGACCAGGAGAAGCTCTGGAGTGGATTGGGTGGATGAACACAGGTAGAAACTCTGCTAGCTATGGCAGCTCCTTTCAAAGCCGTTTCATCATGACTGAAGATGTTCCCAGCAGCACTCAGTACCTCGAGGTCCAGagcctgacagcagcagattctgctgtttacttCTGTGCTCGAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207737 lncRNA upstream 50267 9673498 ~ 9715062 (+) False G153340
TU207736 lncRNA upstream 77500 9658348 ~ 9687829 (+) True G153340
TU207761 lncRNA upstream 87252 9654323 ~ 9678077 (+) True G153359
TU207740 lncRNA upstream 127360 9636829 ~ 9637969 (+) True G153341
TU207745 lncRNA upstream 222395 9542179 ~ 9542934 (+) True G153345
XR_005641881.1 lncRNA downstream 97161 9862985 ~ 9864890 (+) True LOC120574665
TU207833 lncRNA downstream 106497 9872321 ~ 9878863 (+) True G153415
TU207847 lncRNA downstream 155728 9921552 ~ 9935038 (+) True G153423
TU207848 lncRNA downstream 160314 9926138 ~ 9926485 (+) True G153424
XR_005641879.1 lncRNA downstream 181747 9947571 ~ 9950872 (+) False LOC120574664
XM_039825618.1 mRNA upstream 723284 9036901 ~ 9042045 (+) True asphd1
XM_039823792.1 mRNA upstream 796284 8959248 ~ 8969045 (+) False eps8l1a
XM_039824667.1 mRNA downstream 113478 9879302 ~ 9887967 (+) True LOC120574409
XM_039824673.1 mRNA downstream 173139 9938963 ~ 9939633 (+) True LOC120574415
XM_039824991.1 mRNA downstream 174699 9940523 ~ 10027725 (+) False LOC120574577
XM_039824992.1 mRNA downstream 175065 9940889 ~ 10027725 (+) False LOC120574577
XM_039824993.1 mRNA downstream 226965 9992789 ~ 10027725 (+) False LOC120574577
unassigned_transcript_827 other upstream 5149 9759625 ~ 9760180 (+) True LOC120574606
unassigned_transcript_825 other upstream 8421 9756489 ~ 9756908 (+) True LOC120574655
unassigned_transcript_824 other upstream 11066 9753717 ~ 9754263 (+) True LOC120574396
unassigned_transcript_823 other upstream 12728 9751939 ~ 9752601 (+) True LOC120574628
TU207814 other upstream 12771 9752048 ~ 9752558 (+) False LOC120574628
TU207818 other downstream 646 9766470 ~ 9782565 (+) True G153401
TU207826 other downstream 2814 9768638 ~ 9769251 (+) True G153409
TU207803 other downstream 4811 9770635 ~ 9771125 (+) False LOC120574397
TU207811 other downstream 18008 9783832 ~ 9909154 (+) True G153394
TU207802 other downstream 23382 9789206 ~ 9789772 (+) True G153385

Expression Profile