RNA id: TU214262


Basic Information

Item Value
RNA id TU214262
length 822
lncRNA type sense_over
GC content 0.43
exon number 2
gene id G158075
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 25869170 ~ 25988326 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCACCTTGCTTCCGCCAACTTCACCGCTGAAGATGTTCTCGAGCCGAAGAATACGCGTCCAGCAAGACAATAAAACTTTGAGTGGGATTTTAGTTTAGaacgttttgtttgtttgttcctcCGCTCCGCCGAACACAACGTGATGGGCGTGCGATTCAATATCCAGGAGTCAAGGCAGCGTAggtctttctctctcgctctctctctctctctctctctctctctcTCTGCCTAACAGTGTGTTAATTTTCTTTGACTTCAAATTTTATCATGTTACGAAATAAGagtttagaattttttttttttttttacatttactaaTGTactgtgaaatgtgtgtgtcctgtgtttaTTTGTCACTGAATCATTGGCGTCAATCCTGGGTATGTCTCCCCCTGTGCTTGCTGGTTGTACACTGTTACGAAGGTAAGTTGCAGGGAGCTGTAGTCAAGTGTCTATTAACACTAATGCACACATGACACGGTGTTTTCAACAAATGTCACAAACTCCCTGTAATGCGTGTACATGTGCGCCACTTTATAGGTGTTCCCTCTCTCCTTTAGGCTCTTCTCTTTTTAAGCATCTCCAAATACATGCGGAGCGACTTCTGAATGGAGTCTTTGGTGATGAAGCTGACAAAGTTTTGGATGTCGGCCTCTCTGTTGGACGTCAGCTTGTCGACGGTTGGCTTCCTCATCATGGACTTGGTGATCTGTCTGGCGTGGTCTGTAAAGAAAGAACCGACGTACAGTTAGCTCACCGATTCCAATTCAAGTTAAGTTTGTTTTTCTGCCCCTACATTCATGTTGCTCAATGTTTCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU214248 lncRNA upstream 226609 25638368 ~ 25730178 (+) True G158064
TU214219 lncRNA upstream 230306 25646198 ~ 25726481 (+) True G158045
TU214220 lncRNA upstream 305773 25642632 ~ 25651014 (+) True G158046
TU214233 lncRNA upstream 343703 25611640 ~ 25613084 (+) True G158059
TU214204 lncRNA upstream 349426 25563577 ~ 25607361 (+) True G158042
TU214383 lncRNA downstream 10203 25998529 ~ 25998753 (+) True G158179
XR_005641923.1 lncRNA downstream 25909 26014235 ~ 26017003 (+) False LOC120574899
TU214384 lncRNA downstream 25963 26014289 ~ 26017515 (+) True LOC120574899
TU214393 lncRNA downstream 52353 26040679 ~ 26048461 (+) True G158187
TU214405 lncRNA downstream 101605 26089931 ~ 26090355 (+) False LOC120575027
XM_039825854.1 mRNA upstream 78368 25864573 ~ 25878419 (+) True LOC120575190
XM_039823941.1 mRNA upstream 253019 25684331 ~ 25703768 (+) False traf7
XM_039825627.1 mRNA downstream 7699 25996025 ~ 25997758 (+) True LOC120575039
XM_039825996.1 mRNA downstream 15442 26003768 ~ 26010114 (+) True LOC120575277
XM_039825601.1 mRNA downstream 89293 26077619 ~ 26101488 (+) True aldh16a1
XM_039825611.1 mRNA downstream 101326 26089652 ~ 26091008 (+) False LOC120575027
XM_039825610.1 mRNA downstream 101388 26089714 ~ 26091008 (+) True LOC120575027
TU214145 other upstream 620222 25330435 ~ 25336565 (+) False G158004
XR_005641896.1 other upstream 753952 25197648 ~ 25202835 (+) False srsf2b
XR_005641897.1 other upstream 753952 25197648 ~ 25202835 (+) False srsf2b
XR_005641895.1 other upstream 753952 25197649 ~ 25202835 (+) False srsf2b
TU213823 other upstream 1234832 24702871 ~ 24721955 (+) False rab40c
TU214388 other downstream 43978 26032304 ~ 26036164 (+) True G158184
TU214389 other downstream 43978 26032304 ~ 26035534 (+) False G158184
TU214563 other downstream 467312 26455638 ~ 26469767 (+) True G158276
TU214580 other downstream 587313 26575639 ~ 26628036 (+) True G158291
TU214866 other downstream 1668571 27656897 ~ 27661623 (+) False smg1

Expression Profile