RNA id: XM_039823939.1


Basic Information

Item Value
RNA id XM_039823939.1
length 5321
RNA type mRNA
GC content 0.47
exon number 22
gene id traf7
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 25684331 ~ 25703768 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGGCATTtgaactgtgtgtatgtgaggcagagagagagggagagagagagaggaagatttAGGAATTCGTCTGCAGACTTACAGCTACGCTGTATAATGAATAATGGAGCAGTGGTAAGACGCCTCGCTACAACCCATACTCCTTAGGAGCAGCATCAGCAGTCATCCCGTGCAGCCCCCCCAACCCAGCAGCAGACTCTGGCAACGAGttGAACTCCACACTGTCTCTATACCAATTTATCGATCCATCCAACCCTCCTTTCTTCGCTGCAGAGCAGGATGGAGACTTCATTTGGCCCTACCTTCGCAGCCGTGGCTGCTGGAGCCAAAGCAGAAGGTTCCAGCACCTACAAGCAGCATAGGAGaactccctcctcctccagcacTCTGACCTACTCTCCCCGGGATGACGACGATGGAATGCCTCCTATTGGTACTCCCCGGAGGTCAGATTCAGCCATCTCAATCCGATCTCTCCATTCTGAGTCCAACATGTCCCTGCGCTCCACTTTCTCTCTGcacgaagaggaggaggacacggagCCCCAGGTGTTTGCTGAACAGCCGTCCGTTAaactgtgctgtcagctgtgctgtaaCGTCTTCAAGGACCCCGTCATCACCACATGTGGGCACACCTTCTGCAGACGATGTGCCTTGACTTCAGACAAGTGCCCAGTGGACGCGGCCAAGCTAACGGTCGTGGTGAACAACATTGCGGTAGCCGAGCAGATCGGAGAGCTGTTCATTCACTGTAAATATGGCTGCAGGGCCACGGCAAGCGCTGCAGGCGGGGCTGCAGTCTCCACCTCCACAGTGGCTGGGAAACCTGGAGCGTACGAGGTGGACCCACTGGGCTGCCCGTTCACCATCAAACTGACCACACGCAAAGAACATGAGGCCAGTTGTGACTACAGGCCAGTCCGCTGTCCCAACAACCCTTCCTGCCCCCCGCTGCTCACCATGAACCTGGAGGCTCACCTCAAAGAATGTGAGCACATCAAGTGTCCGCACTCCAAATATGGCTGCACGTTTATCGGTAACCAGGACACGTATGAAACACACCTGGAAGTGTGTAAATTTGAGGGTCTGAAGGAGTTTCTGCAACAAACTGATGACAGGTTCCATGAGATGCAGGTGACTCTGGCCCAGAAGGACCAAGATATTGCTTTCCTGCGCTCTATGCTGGGAAAACTATCTGAGAAGTTGGATCAGCTAGAGAAGAACCTGGAGCTCAAATTTGatGTGTTGGATGAGAACCAGAGTAAACTCAGCGAGGACCTGATGGAATTTCGTAGAGATGCGTCCATGCTTAACgatGAGTTGTCCCACATCAACGCCAGGCTCAACATGGGAATCCTGGGCTcATACGACCCCCAGCAGATCTTCAAGTGTAAGGGGACATTTGTTGGCCACCAGGGTCCCgtttggtgtctgtgtgtgtactccACTGGAGACCTACTCTTCTCTGGATCCTCAGATAAGACTATCAAGGTATGGGACACGTGTACCACctacaaatgtcagaaaacccTCGAGGGCCATGATGGCATCGTACTAGCATTGTGTATTCAAGGAAACAGGCTGTACAGTGGCTCTGCAGACTGCACCATCATCGTGTGGGACATCCAGACCCTGCAGAAAGTCAATACAATCCGTGCCCATGACAACCCTGTATGTACACTGGTCTCCTCCCACAATATGTTGTTCAGCGGCTCCCTCAAGGCCATTAAGGTGTGGGACATTGTGGGTACggagctgaagctgaagaaggAGCTGACCGGTCTGAATCACTGGGTTAGAGCACTGGTGGCCTCCCAGAACCACCTGTACAGCGGCTCATATCAGACCATCAAGatTTGGGACATCCGCTCTCTGGAGTGTGTTCACGTCCTGCAGACCAGTGGGGGCAGCGTCTACTCCATCGCCGTCACCAACCACCACATCGTCTGTGGCACCTATGAAAACCTCATCCATGTGTGGGACATTGAGTCTAAAGAGCAGGTGCGGACCCTGACAGGTCATGTGGGAACAGTTTACGCTCTTGCTGTCATCTCCACCCCTGACCAGACCAAAGTGTTCAGCGCCTCCTACGACCGCTCACTCAGGGTGTGGAGCATGGACAACATGATCTGTACCCAGACCCTGCTCAGACACCAGGGCAGTGTAACGGCTCTAGCCGTCTCCAGAGGGCGCCTCTTCTCTGGTGCTGTCGACAGCACCGTCAAGgTGTGGACATGCTAAATGAACCGTTTGCTCTGCAGGAGTCCAGTCAACTCCACGTGTCTTTGTTAGTCAGAAGACAGACGCTATGAACGGTAACCTTTCCACGCCATTTTCCTCCTCCACACCTGTTTCTTTGATTGTGATTTAACGGCCACAGACCAGTAGCAACCACCCCTTCACAATCAAGCTGCATCGGAAGCATTTTCAACTGTGTTGCTGTTAAAACTTCAAACAAACCCTCTCAACGCCTTGACCAGATTGCCCGGATTGAGGGTCAACTCGTGGTCACGCTCCTTAGTGACCTCTTCTCCAGTGCATTACGGGGCAAAATAAGACAAGCTGCCTTACGGTTGCACCGCACTCTGCCAAAAACTAACATGGACTGGCTGCTGCAGCCCTGTAATCAGAGCAGTAAGCAGAGGGTTCTCAAACTGTAGTCCTGCCTGCTTCCTGCGGACACACGGCCAGTTTCAGAACTGTACTGATGATGCCTGATGCATACTGTTCACACAAGTCAAAGGGCTGGTTTCACAAACATGGAGTGACACCACACTCACTCCAAATGTATATGTCATGTATCCCACAATACATAAGGACAGGACATTTAAATTGGGAtgttattttatgcaaatgaagtagttttatgttaaaatgtatgaaaaaacTTTAATTGATCCCGAACCAGGATTTTCCCTGAAACATCAGAAAGTGAAAAAAGGGTTAAAACAGACGCGTGTTTGTTATTTTTGCAGTTCTTCATGAAGAAGTGAGTGAGTCATGGTGACCACATAGTAACTATCCTCCCCTTAATATTCTGgtatcctcttttttttccccccttgtTGTAACCTGGTGGTCTTTATTCATAACTTAAAGCTGGCGTAGGCAGTTTTCTGGAGAAGGCAAAACAAACTAGAATTTGAAAATACAGCCCTCCGCCTGCAGCTCTCTCCTCTCGGTCCTAATGTGGACCCGAGGAAGAGTAGCTGTGCTTAAGGGCACAGCTAATGGGGATTCTATAATATAATTAACTAAACTAAACCAAGCTCCTCCCAGCAGATGAGCACGGGCACATGCACGCGTTTCATACATGAACCTGTACGAGTACTCTGTCATTCATTTCAATCATCCCGATCGGGATTGTGATCCCAATGCCGTTTATATAACAGCAATTCTATGAGAATGACTGTCCTGTTTTCTCTGTAAAGCCCTTTGAGATGACAGACTGTGATTCGAGGCTCTAGCTAGCTACAGAAAGATGAACTTGAATTAGCCGCAGCTGTGAGCCTTTGGCTGCAGTTAGCAGAAGGCTAAACTATTAGCAgcattttctctccatctctgaaaACGCTTTGCCGATATTGACACGTTTTGTCTGGTTGATCAACAGCAAAGAGATTCATGAAGGCAAATTTTCCATCAACTTGCGCAAATAAGAAAGAAATGCGAACCATAAAAGATCAAAGAAAGGATACCCCCATACTTCAGTCAGCATCTGGCCAGGACGAACCCTGAAAATGAAATACTTTAGCACTTTCACACTAGCTGGCGTGTTGATAAAAAAACGATGGCTGAGAAGCATTAAGAATGAACTAAAGACATGTCCAGTTCCTAGCAGACCATGTCCAGAGGGAGATGGTTTTTGTCTCTTAACACTCCATTTCAGGTCCCAGACTTACTAACGGTTTTCCTCCCTCTTCGACCACTGGGGTTGTCACCCACAAGTCAGTGAAACCAGCCTTTTACAAAACACTTTTTATCAAGTGAAGACTTTAAAGAGAATGACGGATCTATAGATTTACTGAGTTTTATATTAGTGCCATGATAGAGCTGTATTCAGAGAGCCATTAACGGTTGTACAGTTGTGTAAAATAAGATTAGTGCCGAGCCCGGACATGTGCCCCATGAGAATGACTCACACTGGCCTACATAACGGAGAGGGACAGGGGGAgagggcgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtctgttatcgTGTATATGTGAGTGTGTTTCAATGAGTGCCATATGTGTGGATGAAAAGTAAGGAAAGACTGTAATGATGTGTCTTTTTGTCCCCTCTTtctgcctctccctcctcccccctcctctctctgatTTCTAACTTGGACTGGTTAGAATGAACATAACCACAGATTAATGCTGATTGTTGTTTTATGACTGTAACACTCGATGGACTGACAGTGAAGGCAAGCAGGTGATCGTTTGTAATTAACCTTAAATGGGTAATTTCGGGGGTGGTTTCAACCAGAACGCTTTTTACCCCTATGCATTTAtgtctaatagactgatgtgaacaaaaatctttgaaattgttccagtattgagaaaaaaaataaacggcGTTCACCGGACTCGCGTTCCACACACCGCTATCTTCAGAACAAGATGTCACCTCGCGAGAacaataatgttgtcagacacttttagtAACAATCTGAGCTAGTCGGGAGCAAAATCAATCATTTCAAAATCAAGGGTGTACAATTGCCCCATTGGGTTACATTGCGGCCCGGTTCGCGGTGGCCCGGTTACTGCGTtttcgctcaatactggaccgatTTTCAAAGGTTTTTGTTCACATCGGTCTATGTGAGGAATGGGGAAATAGTCCAggttgaaagaaaagaaaaaaaaaaaaatggaatttaCCCTTTTAAACTCCCAGAGGCAAATGCATAGAAAGTGCCATTGAGCTAAAGTGAAGTCCTGCTTTCCTAAATTATGTTTGGGGACCCATATTGGGTTGACAATGTATAAAACTGACTAAACGAGCCTGGGAGGGTAGTTTTTAAGTTCATGAGATCATGTACATCTACACCAAATTTAGACACGTGGGCTAAATTCAGTTTTTACAGATGTTTAGAATTATGTTGCCTTCATTTCAGTGCACATCTGGCCACTACTACTGTACTTACTGTAGCCTTGGTGAGAAAGGTAGTGGGGAAAGGAAGGAAGTGTCTTCACTGGTCACAGTTCAAGTGATTCCTTGTATACTTGTAATCATGTAAGCCTGAGTTGATCATTGATCAATAAAACTGTTGTACACTTTGA

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU214220 lncRNA upstream 33324 25642632 ~ 25651014 (+) True G158046
TU214233 lncRNA upstream 71254 25611640 ~ 25613084 (+) True G158059
TU214204 lncRNA upstream 76977 25563577 ~ 25607361 (+) True G158042
TU214263 lncRNA downstream 165402 25869170 ~ 25988326 (+) False G158075
TU214262 lncRNA downstream 253019 25956787 ~ 25988326 (+) True G158075
TU214383 lncRNA downstream 294761 25998529 ~ 25998753 (+) True G158179
XR_005641923.1 lncRNA downstream 310467 26014235 ~ 26017003 (+) False LOC120574899
TU214384 lncRNA downstream 310521 26014289 ~ 26017515 (+) True LOC120574899
XM_039823918.1 mRNA upstream 78967 25458195 ~ 25605371 (+) False nfixb
XM_039825854.1 mRNA downstream 160805 25864573 ~ 25878419 (+) True LOC120575190
XM_039825825.1 mRNA downstream 273524 25977292 ~ 25986786 (+) True dnase1
XM_039825627.1 mRNA downstream 292257 25996025 ~ 25997758 (+) True LOC120575039
XM_039825996.1 mRNA downstream 300000 26003768 ~ 26010114 (+) True LOC120575277
XM_039825601.1 mRNA downstream 373851 26077619 ~ 26101488 (+) True aldh16a1
TU214145 other upstream 347773 25330435 ~ 25336565 (+) False G158004
XR_005641896.1 other upstream 481503 25197648 ~ 25202835 (+) False srsf2b
XR_005641897.1 other upstream 481503 25197648 ~ 25202835 (+) False srsf2b
XR_005641895.1 other upstream 481503 25197649 ~ 25202835 (+) False srsf2b
TU213823 other upstream 962383 24702871 ~ 24721955 (+) False rab40c
TU214388 other downstream 328536 26032304 ~ 26036164 (+) True G158184
TU214389 other downstream 328536 26032304 ~ 26035534 (+) False G158184
TU214563 other downstream 751870 26455638 ~ 26469767 (+) True G158276
TU214580 other downstream 871871 26575639 ~ 26628036 (+) True G158291
TU214866 other downstream 1953129 27656897 ~ 27661623 (+) False smg1

Expression Profile