RNA id: XM_039824420.1


Basic Information

Item Value
RNA id XM_039824420.1
length 3159
RNA type mRNA
GC content 0.51
exon number 17
gene id LOC120574196
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 25217088 ~ 25244583 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCCACCGGGATTGTCGCTGCCAGTGGGATGCCGGACACAATTAATAACGTTAGAGAAAGACCAAAGCTACATTCATTTTTTGCTTTATCCAATATATTTTCGCTATTAATCAAGACAGGGGTCGTCACAAGCGGAataagttagctaacgttaaaataTAGCTTAACTTTAACTTATTAACAGTTGTGTTCTCACCCACAAAGAAAAATGTCGGAGGAGAACATTAGCTTGTTTCAGTTGTTGGATTTAGCCATCGGGACACCCCAGAGAGGAGCTGTCAACTTCAGCGCCCTACACGCCCTGCTCCACGCTGTGCTCAGGCAGCTGGATATCCCGGAGATGAAGACCCCGTTTAGGGACACTCCTCCCGGCGACATACACCCTGATGCTCTGGTGGGTGACTACCAGAGCATCACCACTCCCAAACTGGACCACGAGACAGAGGAGGACCAGCACCAGGCGCACAGGGACATTTCCACGGTGGAGCAGGAGGTTCAGCCAGGCACCGATCTGCAGGAGCGGGcagcctcctcctcatctccgaCCCCCTCCTCCGGTCCCGCGGCAACCGACCAGTGCAGGCTGCAGTCCCGCATCCAGACCTGCGAGGACGGCGTCGCCAAGGCCATGAAGCTCATTCAGGAGGTCCAAAGCCAAAATCTGAAGAACCTGAagaaagagacacagaaaaaaatgaaaaaagagacGGAGGAAGAGACGGAGGAAGAGATGaaggaagagacagaggaagagacgGAGGACGAGACGGAGGAAGAGATGACGgaagagatgaagaaagagaCAAAGGAGTTCCGCCACCAACAGAAGATGACCACGGAGCGTCCTTCAGTCCCGTCAGGGCCaccacagcatcctgctgcAGGCCCGACAGGTGCCGGTGCGCCCCTGGCTCAGGAGGCCAATGGCTCGGAGACGGCAGAGGCCCTGAAGAAAATCGGCAAACTGACGGAGGGGTTCGGCAAGCTGAAAGCTCGTGTTGCTGCGCTGGAAGAAGATAAAGTGGACCAGTCACAGCTGATGCACCTTAAAAATCTCATCACTAACCAAGATTTAGATTCCAAGGATGCATTGAATAACCTGATGGATCAGCTGAACCAGCAGCAAGCTCTAATAGACAGCCTGATAAGGGACCAGGATAAGCTGGACACGTTTACGAACATAACTGGCTACGACGGAGAAACCACCTCAGAGGCAGCTTCAGGGTGCGAGGAGTCAGACAGCAAAGACTCTGATGAGCTCAGACATCAAATATTCTACCTCAGgaagtctgtgctgaagCTGGAGGACGACATAAAGCAGCTGAAGGCTAGACAGGCTTCATctatggagagagcaaaagaccgACACCTACAAGATCAGCTGGACGACCTGCGAAGCATGTTGGAGGACATGATGCAGTCCTTGACCTGTCAGCTGTCCGATGCTGGGCTGGATGAGAGCAATGATAGCGAGGGCATCGGTCAGAGTAAAGATCAGAGATCAGAGTTTACCATCAGCACAATGAACACTGGCAGGAAGCTCAGCCTTCTGTTCCAGCACTATGAGCAGCTGCAGGACACAGTGAGCAGCCTTCTCCAACAGCAGACTGGAGGCAGAGCAGGGCCACTGAAGGACATAGAGGACGTGGAGCTGGTGAACGATGTGCAGAAGGCGATCCTGCACCTTCAGGCCGAGTGTCAAAATCTGCATGAAACCACCAGATGTCTGCACGAGGacaacagacagaaacaaagcCACATAGATGAACTGTACAAGACGACAGAGGAGCTGGGGGAGAAGAAGGCCGACAAGGAGATGGTTGAGAGTGAAATCAAAGCAGATAAATTTGCTCTGGAGAGCAAAGTGAGCCGTCTGCAGTTTGACTCTGTGACAGAGCAGCTCAACGCCATGTTCCACGAGCTGCTGAACAAGGTGACCGGTCACGAGCAGGACTGGCACAAAGTCATCGACAAACTCTCTACCGAGATGGAATGTAAGTTGAACAGGATGGAGTTGGACTCTGTGAAGAAGCAGCTGGAAAATCGCTGGAAGAACATCCACGAGAAGCTTCAGGCTCAGGGGGCTCCAGAGCACGAGGATGCTGCTGGTATCAGAAAACAACTCGTGGACAGATTTCACTGCCTCTCCTGTGACCGACCTGTTGTCATGCACACCCCCGGACAGCATCTGGCGAAGCAGCCGTCCACTCCTGGATTCCCTTCACACAAGTCCATCAGGCCGTTTACTGTTTACGCTCTGGAGCAGTTTCGACAGCACTACAGGAGCGAGCGGATCTCTGAAATGACTGAGTACAGTCACCTGGCCGCGTCACGGAGCTGCGGGGGGAGTCACACAGTTACCATGGCAGGCCAGCGACGCCCCGTCCTGCAGTACATGAAGCACAACCCCCAGACAGAGGTGGACGCTGTGATTCCGTCGGAGGAGGTTGATATCATCGGACTGGACGGGCATATTTACAAAGGTCGCCTGAACGCATCTACCATCAGAAATACAGAAACTAAACTACCTACAATCTCTACCAAAGACGGCATGTGCAAAACCAAAGACAAGGCCAAGTGCTCCCCGTCCCACAAACCGGCTTCTTCTCCGGAGCTGGGACACGGCCCTCCGGTTTATCCGCCCCACAGTGCCAAGAGTGCCCAGTGCAGCCGCTCaaCCTCCAGCAACTCCGGGCGGGACTGGCCCGTGTCGGCTCTGGGCTGCACGTCTCAGCTCGGCTCCGTCTCTCTGgtttcagctgcagcagagagcCTGAACGCAGAGCCTATTGCTGAGCAGCTGCTCAACCTGTAAGGGCCATCACTCAGCACTCTACTGGCTTTCATATGTAATTAACTTGTAACCTGCTTTGATCTATTTTTTAGTGTACTTTTATTGATTTGTTGcttattgttgtaatttttttttttttttttgcactacatATCCCATAAATAACCTGTAAAACACTAAGTCCAGCACTGTGACGTCTCTTtggattctttttattttttaacctgaGTGTCTGTGATCGGCCACTTTCAATATTATTAAGATGAATTATAATAACAATTAATAAACGTGAGACGGTAAACATAAAACTAACGCCTCTATTCAAAAAAATAGAAGACATTTTAAACTTTATCCGATTTTCAAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU213976 lncRNA upstream 22745 25191705 ~ 25194343 (+) True G157877
TU214004 lncRNA upstream 49100 25164202 ~ 25167988 (+) True G157904
TU213980 lncRNA upstream 114577 25096913 ~ 25102511 (+) False LOC120575219
XR_005641961.1 lncRNA upstream 143851 25070588 ~ 25073237 (+) True LOC120575222
TU213971 lncRNA upstream 144917 25065606 ~ 25072171 (+) False LOC120575222
TU214025 lncRNA downstream 4732 25249315 ~ 25249587 (+) True G157915
XR_005641837.1 lncRNA downstream 16350 25260933 ~ 25262297 (+) True LOC120574200
XR_005641836.1 lncRNA downstream 16350 25260933 ~ 25262297 (+) False LOC120574200
TU214152 lncRNA downstream 83484 25328067 ~ 25331668 (+) True G158005
TU214141 lncRNA downstream 120525 25365108 ~ 25367712 (+) True G158004
XM_039825456.1 mRNA upstream 1096 25206183 ~ 25215992 (+) True mfsd11
XM_039825173.1 mRNA upstream 14253 25197648 ~ 25202835 (+) True srsf2b
XM_039824425.1 mRNA downstream 34819 25279402 ~ 25285893 (+) True foxj1a
XM_039825888.1 mRNA downstream 58458 25303041 ~ 25314893 (+) True amdhd2
XM_039825889.1 mRNA downstream 58473 25303056 ~ 25314893 (+) False amdhd2
XM_039825533.1 mRNA downstream 138781 25383364 ~ 25402792 (+) True zgc:158403
XM_039825534.1 mRNA downstream 138781 25383364 ~ 25402792 (+) False zgc:158403
XR_005641896.1 other upstream 14253 25197648 ~ 25202835 (+) False srsf2b
XR_005641897.1 other upstream 14253 25197648 ~ 25202835 (+) False srsf2b
XR_005641895.1 other upstream 14253 25197649 ~ 25202835 (+) False srsf2b
TU213823 other upstream 495133 24702871 ~ 24721955 (+) False rab40c
TU213394 other upstream 2317317 22896406 ~ 22899771 (+) True G157468
TU214145 other downstream 85852 25330435 ~ 25336565 (+) False G158004
TU214388 other downstream 787721 26032304 ~ 26036164 (+) True G158184
TU214389 other downstream 787721 26032304 ~ 26035534 (+) False G158184
TU214563 other downstream 1211055 26455638 ~ 26469767 (+) True G158276
TU214580 other downstream 1331056 26575639 ~ 26628036 (+) True G158291

Expression Profile