amdhd2 (amdhd2)


Basic Information

Item Value
gene id amdhd2
gene name amdhd2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 25303041 ~ 25314893 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039825888.1
CTGTGTAATCGAAAGACTCAGCTGAAAAGGATTCAGGAGCAGAGCAACAAGAGACAAGtacttttaaaacataaaacattggTATAGTTATTTATTTTGCCTGTTAATGTCAAAATAGATGAAGGGAAACACGGAATGTACGGTCGCCGAATTCGGTTAAAAAATACGTTAGTTTACTGCAGCTTGCTCCTGTATTTTGTGGAAAAAGAGCGACGGAGTAACGGCTGAACACTTTTAAATTGTACAGGAAAAGTGTTGTATTGCGCATTTAATGTACGCCGCATTGACAACTGGATTCTACCAATTCTGAGACTTTTGACTTCTTTCTCTCCCAAGTCTTCTGAAGCAGAGAGGACGGAGTTTGTCTCCACTCGTCTGCTGAGAGAAAAAACATGCCGTCCAACAAGTCAGTGTCTGACGCTGCCATCACTCAGTTCATCAACTGCAGAATACTGAGAGACCACCGGCtacagagagATGACCTATGGGTGCGTGAAGGAAAGGTTTTAGATCCAGAGAAGCTGTTTTTTGATGAGAAGGGTTATGCCGACAAGCGTGTGGACTGTGAAGGCAGCATCATCGCCCCAGGCTTTATAGACGTTCAGATCaatgGAGGATACGGCATTGACTTCTCTCAGGCCTCCGACGACGTCAGCACTGGAGTTTCTTTTGTGGCCAAAAAGATCCTGCAGCACGGCGTGACGTCCTTCTGTCCCACTCTGGTCACCTCGCCTCCCGCTGTCTACCACAAGGTTCTTCCTCAGATCAAAGTTAGCGATGGAGGAGAGCATGGAGCTGGAGTTCTTGGTTTTCATCTGGAGGGCCCGTTCATCAGCGTGGAGAAGAAAGGAGCTCACCCGGAGCAGTTTCTCCGGACCTTCCAGTCCGGAGGGATCGAGGACCTAATGGAGACCTACGGTGGCCTGGACAATATTGCCATGGTGACACTGGCTCCCGAGCTGGGCGGCAGCCAATCAGTGGTGAAGGAGCTCTGCCAGAGGGGCATCACTGTGTCGTTAGGTCACTCTGTGGCCAACCTGTCCCAGGCTGAGGAGGCTGTTCATCACGGAGCCTCCTTCATCACTCACCTCTTTAACGCCATGCTGCCTTTCCACCATCGGGACCCCGGTATAGTGGGTCTCCTGACCAGCGACCAGATTCCTGCAGGCAGGACAGTCTACTACGGCATGATAGCTGACGGGATCCACACTAACCCTGCGGCCCTACGCATCGCCCACAGAGCTCACCCTTCAGGTTTGGTGTTGGTGACAGATGCGATCACAGCGATGGGGCTTCCTCCTGGGCGTCACACTCTGGGTCAGCAGGTCATTGAAATCCAGGGTCTCCACGCTTACGTTGCAGgCACTAAGACACTCTGCGGCAGCATTGCCACGATGGACATGTGTGTACGCCACTTTAAACATGCTTCAGGCTGCAGTGTAGAGGAAGCTCTGGAAGCTGCCTCGCTCCATCCTGCCAAACTTCTGGGTGTCAGCCACAGGAAGGGAACCCTGGACTACGGATCAGACGCAGACCTTGTTTTGCTCGATGACGCCCTCAATGTCGAAGCCACCTTTATATCTGGAGAGGAGGTTTGGAGAAAAGGaccatagaagaagaaaaagcctGCAGACAGTAACTGGCCTGACAGCTGGGACCTTTATGGGACGCTGTTATACACAGAACCACAAATCTGTTGAATGTTTTAGTTCATCAGAACACACAGATGCTTTGCATTTAGAACATGTCAGGTAAGTTGAAATAACAAGGCTTCAGATGTCCTAAAAGGGCCACTGTACAGAGGATAAACCTTTTTTAGATATAGATACAAACTTTCCCCAAGACCTAAGAATAGCAAAGTTGTTCACCCAGAAATATTGTTTGTACGGagtgtaatgtgtgttacaGCCTCACAAGACTGCTACAGATTTGTTGGCTgactttgcttttcttttacaaataaaattttTCATTTAAGCATCTTTAAATCAACTATCAGAAATTTAACTCGGAATCTAACTCATAGTACTTTTATCTGAATGTAAGTAGATTTGAGTTGTATTCTGACATATTCAGGGTTTTATGAAAAATTATGAACTTACTGCAATAGGTTTTCATGCTTCCAGATGCTGtactgtttgttttattttcactcAGATGTGATTTAAAGGGAAACATTTTGGTATTAAACTACATAAATCAACTTTCACTGAATGTTACTGTAATCTTTCATCTTCTAAGCAGTAACATTTACTTTTGTTCTTTCATCTGTTGTTTGGGTGTTCTGTACTAGAGTTTGTGCATGATTTACAGTTCATGTATACCATAGAAGTCATACTGTATCTAAGTCACTCTCATGTGGAACTGCTGCTAACAACTGATAGTCATCTAAAACATGACAAGAACCCCCCACTAGTCATGGCTTTTTGTAAGGGAACCACTGTTTAAAAgcattgcttttatttattattatgcaACAGCTTAATATGAGTAATGAGTACAATATTTTGCTCTAAAATTGCATATAATGAAAAGTAACGTACAAGTACCTCAAGGTTGCACGTTACACAGTCATTCAGTAACTACTCATTAATTAACTTCATTCCTCATTCATTCCTCATtggttaatcattaactacctagttttttgtgtaccttattgtaaagtctTACCCAGTTTTCCACAATATGTTTATCCCttgtgttttcctcccatcGACCATGCACTAGTTAAATTTACCCGGTCTGTTTTGCCAGTTTATAAAGCATCAAGTATaaatta
>XM_039825889.1
ACTCAGCTGAAAAGGATTCAGGAGCAGAGCAACAAGAGACAATCTTCTGAAGCAGAGAGGACGGAGTTTGTCTCCACTCGTCTGCTGAGAGAAAAAACATGCCGTCCAACAAGTCAGTGTCTGACGCTGCCATCACTCAGTTCATCAACTGCAGAATACTGAGAGACCACCGGCtacagagagATGACCTATGGGTGCGTGAAGGAAAGGTTTTAGATCCAGAGAAGCTGTTTTTTGATGAGAAGGGTTATGCCGACAAGCGTGTGGACTGTGAAGGCAGCATCATCGCCCCAGGCTTTATAGACGTTCAGATCaatgGAGGATACGGCATTGACTTCTCTCAGGCCTCCGACGACGTCAGCACTGGAGTTTCTTTTGTGGCCAAAAAGATCCTGCAGCACGGCGTGACGTCCTTCTGTCCCACTCTGGTCACCTCGCCTCCCGCTGTCTACCACAAGGTTCTTCCTCAGATCAAAGTTAGCGATGGAGGAGAGCATGGAGCTGGAGTTCTTGGTTTTCATCTGGAGGGCCCGTTCATCAGCGTGGAGAAGAAAGGAGCTCACCCGGAGCAGTTTCTCCGGACCTTCCAGTCCGGAGGGATCGAGGACCTAATGGAGACCTACGGTGGCCTGGACAATATTGCCATGGTGACACTGGCTCCCGAGCTGGGCGGCAGCCAATCAGTGGTGAAGGAGCTCTGCCAGAGGGGCATCACTGTGTCGTTAGGTCACTCTGTGGCCAACCTGTCCCAGGCTGAGGAGGCTGTTCATCACGGAGCCTCCTTCATCACTCACCTCTTTAACGCCATGCTGCCTTTCCACCATCGGGACCCCGGTATAGTGGGTCTCCTGACCAGCGACCAGATTCCTGCAGGCAGGACAGTCTACTACGGCATGATAGCTGACGGGATCCACACTAACCCTGCGGCCCTACGCATCGCCCACAGAGCTCACCCTTCAGGTTTGGTGTTGGTGACAGATGCGATCACAGCGATGGGGCTTCCTCCTGGGCGTCACACTCTGGGTCAGCAGGTCATTGAAATCCAGGGTCTCCACGCTTACGTTGCAGgCACTAAGACACTCTGCGGCAGCATTGCCACGATGGACATGTGTGTACGCCACTTTAAACATGCTTCAGGCTGCAGTGTAGAGGAAGCTCTGGAAGCTGCCTCGCTCCATCCTGCCAAACTTCTGGGTGTCAGCCACAGGAAGGGAACCCTGGACTACGGATCAGACGCAGACCTTGTTTTGCTCGATGACGCCCTCAATGTCGAAGCCACCTTTATATCTGGAGAGGAGGTTTGGAGAAAAGGaccatagaagaagaaaaagcctGCAGACAGTAACTGGCCTGACAGCTGGGACCTTTATGGGACGCTGTTATACACAGAACCACAAATCTGTTGAATGTTTTAGTTCATCAGAACACACAGATGCTTTGCATTTAGAACATGTCAGGTAAGTTGAAATAACAAGGCTTCAGATGTCCTAAAAGGGCCACTGTACAGAGGATAAACCTTTTTTAGATATAGATACAAACTTTCCCCAAGACCTAAGAATAGCAAAGTTGTTCACCCAGAAATATTGTTTGTACGGagtgtaatgtgtgttacaGCCTCACAAGACTGCTACAGATTTGTTGGCTgactttgcttttcttttacaaataaaattttTCATTTAAGCATCTTTAAATCAACTATCAGAAATTTAACTCGGAATCTAACTCATAGTACTTTTATCTGAATGTAAGTAGATTTGAGTTGTATTCTGACATATTCAGGGTTTTATGAAAAATTATGAACTTACTGCAATAGGTTTTCATGCTTCCAGATGCTGtactgtttgttttattttcactcAGATGTGATTTAAAGGGAAACATTTTGGTATTAAACTACATAAATCAACTTTCACTGAATGTTACTGTAATCTTTCATCTTCTAAGCAGTAACATTTACTTTTGTTCTTTCATCTGTTGTTTGGGTGTTCTGTACTAGAGTTTGTGCATGATTTACAGTTCATGTATACCATAGAAGTCATACTGTATCTAAGTCACTCTCATGTGGAACTGCTGCTAACAACTGATAGTCATCTAAAACATGACAAGAACCCCCCACTAGTCATGGCTTTTTGTAAGGGAACCACTGTTTAAAAgcattgcttttatttattattatgcaACAGCTTAATATGAGTAATGAGTACAATATTTTGCTCTAAAATTGCATATAATGAAAAGTAACGTACAAGTACCTCAAGGTTGCACGTTACACAGTCATTCAGTAACTACTCATTAATTAACTTCATTCCTCATTCATTCCTCATtggttaatcattaactacctagttttttgtgtaccttattgtaaagtctTACCCAGTTTTCCACAATATGTTTATCCCttgtgttttcctcccatcGACCATGCACTAGTTAAATTTACCCGGTCTGTTTTGCCAGTTTATAAAGCATCAAGTATaaatta

Function

symbol description
amdhd2 Predicted to enable N-acetylglucosamine-6-phosphate deacetylase activity. Predicted to be involved in N-acetylglucosamine catabolic process. Predicted to act upstream of or within N-acetylglucosamine metabolic process and carbohydrate metabolic process. Is expressed in blood vessel; immature eye; neural crest; retina; and yolk syncytial layer. Orthologous to human AMDHD2 (amidohydrolase domain containing 2).

NR:

description
N-acetylglucosamine-6-phosphate deacetylase

GO: NA

KEGG:

id description
K01443 nagA, AMDHD2; N-acetylglucosamine-6-phosphate deacetylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039825888.1 True 2782 mRNA 0.44 12 25303041 25314893
XM_039825889.1 False 2488 mRNA 0.45 12 25303056 25314893

Neighbor

gene id symbol gene type direction distance location
foxj1a foxj1,LOC102198006 coding upstream 17148 25279402 ~ 25285893 (+)
LOC120574196 LOC104946427 coding upstream 58458 25217088 ~ 25244583 (+)
mfsd11 mfsd11 coding upstream 87049 25206183 ~ 25215992 (+)
LOC120575220 NA coding upstream 128337 25168124 ~ 25174704 (+)
LOC120575275 NA coding upstream 167119 25117079 ~ 25135922 (+)
nfixb nfix,LOC107098150,LOC108247522,LOC101068460,LOC106601192,LOC106517806,LOC103393624,LOC106532719,LOC103370143 coding downstream 124845 25439738 ~ 25605371 (+)
traf7 traf7 coding downstream 369438 25684331 ~ 25703768 (+)
LOC120575190 prpsap2,LOC103393631 coding downstream 549680 25864573 ~ 25878419 (+)
dnase1 dnase1l2 coding downstream 662399 25977292 ~ 25986786 (+)
LOC120575039 pacrg,LOC107697704,LOC107583491,LOC107695182 coding downstream 681132 25996025 ~ 25997758 (+)
LOC120574200 NA non-coding upstream 40744 25260933 ~ 25262297 (+)
G157915 NA non-coding upstream 53454 25249315 ~ 25249587 (+)
G157877 eif1b,LOC107396491,LOC101163413,LOC103469494,LOC100702522,LOC104946424 non-coding upstream 108698 25191705 ~ 25194343 (+)
G157904 NA non-coding upstream 135053 25164202 ~ 25167988 (+)
LOC120575222 NA non-coding upstream 229804 25065606 ~ 25073237 (+)
G158005 LOC104963332,LOC104953734,LOC104942256,LOC104948352 non-coding downstream 13174 25328067 ~ 25331668 (+)
LOC120574001 NA non-coding downstream 57073 25371966 ~ 25373342 (+)
G158031 NA non-coding downstream 77312 25392205 ~ 25393161 (+)
G158029 gadd45gip1,LOC102786745 non-coding downstream 88428 25403321 ~ 25407195 (+)
G158042 NA non-coding downstream 248684 25563577 ~ 25607361 (+)
srsf2b LOC104946423,LOC101476251,LOC100695205 other upstream 100206 25197648 ~ 25202835 (+)
LOC120575219 NA other upstream 200530 25083281 ~ 25102511 (+)
LOC120574235 anapc2 other upstream 443269 24852538 ~ 24859772 (+)
rab40c rab40c,LOC103366693,LOC107690266,LOC107567894,LOC107685905,LOC107590575,LOC103393433 other upstream 579171 24702819 ~ 24723870 (+)
grin2ca LOC103366762 other upstream 1165458 24053726 ~ 24137583 (+)
G158004 NA other downstream 15542 25330435 ~ 25367712 (+)
zgc:158403 LOC103370216,LOC106932766 other downstream 68471 25383364 ~ 25403052 (+)
G158184 NA other downstream 717411 26032304 ~ 26036164 (+)
LOC120575027 NA other downstream 774759 26089652 ~ 26091008 (+)
G158276 NA other downstream 1140745 26455638 ~ 26469767 (+)

Expression


Co-expression Network