LOC120574001


Basic Information

Item Value
gene id LOC120574001
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 25371966 ~ 25373342 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU214157
GGGGGGAGGGGGTCCTCGGTTTTCATTTTCAACTGAACCAATTCAGAGCACATAGCTACAACCACAGTTGCTCTTCCAATTCATCCTCATGTACACTCATCATAGCCCCTGGAGGCTTTCAGAAGATGACCGGGGGGGAGGTACTGGGAGTGGGCGGGTAGGTGGAGCTGGGAGGGTCTTCTGTACCTGGCCATCTGGCCGTGGCTTGCAGAAGGCATAAAAGACTGCTCTCCTGGGAGTCTCTGACTCTCTCAGCTGGTCCTACTGCATCCATCTGccattttgttctttgtttggtttgttgCACCTTACAACACACATCATACCATTCATTCACTCATCCACACAGGGCAAACACGACTGATGTCTTCTACATTTACACACCCCACTATTGCATTTATGTTTAGTTC
>XR_005641810.1
GTCCTCGGTTTTCATTTTCAACTGAACCAATTCAGAGCACATAGCTACAACCACAGTTGCTCTTCCAATTCATCCTCATGTACACTCATCATAGCCCCTGGAGGCTTTCAGAAGATGACCGGGGGGGAGGTACTGGGAGTGGGCGGGTAGGTGGAGCTGGGAGGGTCTTCTGTACCTGGCCATCTGGCCGTGGCTTGCAGAAGGCATAAAAGACTGCTCTCCTGGGAGTCTCTGACTCTCTCAGCTGGTCCTACTGCATCCATCTGccattttgttctttgtttggtttgttgCACCTTACAACACACATCATACCATTCATTCACTCATCCACACAGGGCAAACACGACTGATGTCTTCTACATTTACACACCCCACTATTGCATTTATGTTTAGTTCATTTGTGTTATTAGTCTATTTAGTTAAATAAACCACTTTTTGGTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU214157 False 410 lncRNA 0.50 2 25371966 25373296
XR_005641810.1 True 445 lncRNA 0.46 2 25371977 25373342

Neighbor

gene id symbol gene type direction distance location
amdhd2 amdhd2 coding upstream 57073 25303041 ~ 25314893 (+)
foxj1a foxj1,LOC102198006 coding upstream 86073 25279402 ~ 25285893 (+)
LOC120574196 LOC104946427 coding upstream 127383 25217088 ~ 25244583 (+)
mfsd11 mfsd11 coding upstream 155974 25206183 ~ 25215992 (+)
LOC120575220 NA coding upstream 197262 25168124 ~ 25174704 (+)
nfixb nfix,LOC107098150,LOC108247522,LOC101068460,LOC106601192,LOC106517806,LOC103393624,LOC106532719,LOC103370143 coding downstream 66396 25439738 ~ 25605371 (+)
traf7 traf7 coding downstream 310989 25684331 ~ 25703768 (+)
LOC120575190 prpsap2,LOC103393631 coding downstream 491231 25864573 ~ 25878419 (+)
dnase1 dnase1l2 coding downstream 603950 25977292 ~ 25986786 (+)
LOC120575039 pacrg,LOC107697704,LOC107583491,LOC107695182 coding downstream 622683 25996025 ~ 25997758 (+)
G158005 LOC104963332,LOC104953734,LOC104942256,LOC104948352 non-coding upstream 40298 25328067 ~ 25331668 (+)
LOC120574200 NA non-coding upstream 109669 25260933 ~ 25262297 (+)
G157915 NA non-coding upstream 122379 25249315 ~ 25249587 (+)
G157877 eif1b,LOC107396491,LOC101163413,LOC103469494,LOC100702522,LOC104946424 non-coding upstream 177623 25191705 ~ 25194343 (+)
G157904 NA non-coding upstream 203978 25164202 ~ 25167988 (+)
G158031 NA non-coding downstream 18863 25392205 ~ 25393161 (+)
G158029 gadd45gip1,LOC102786745 non-coding downstream 29979 25403321 ~ 25407195 (+)
G158042 NA non-coding downstream 190235 25563577 ~ 25607361 (+)
G158059 NA non-coding downstream 238298 25611640 ~ 25613084 (+)
G158064 NA non-coding downstream 265026 25638368 ~ 25730178 (+)
G158004 NA other upstream 4254 25330435 ~ 25367712 (+)
srsf2b LOC104946423,LOC101476251,LOC100695205 other upstream 169131 25197648 ~ 25202835 (+)
LOC120575219 NA other upstream 269455 25083281 ~ 25102511 (+)
LOC120574235 anapc2 other upstream 512194 24852538 ~ 24859772 (+)
rab40c rab40c,LOC103366693,LOC107690266,LOC107567894,LOC107685905,LOC107590575,LOC103393433 other upstream 648096 24702819 ~ 24723870 (+)
zgc:158403 LOC103370216,LOC106932766 other downstream 10022 25383364 ~ 25403052 (+)
G158184 NA other downstream 658962 26032304 ~ 26036164 (+)
LOC120575027 NA other downstream 716310 26089652 ~ 26091008 (+)
G158276 NA other downstream 1082296 26455638 ~ 26469767 (+)
G158291 nsf,LOC101477540,LOC102297066,LOC100697603 other downstream 1202297 26575639 ~ 26628036 (+)

Expression


Co-expression Network