RNA id: XM_039824499.1


Basic Information

Item Value
RNA id XM_039824499.1
length 1528
RNA type mRNA
GC content 0.47
exon number 9
gene id zgc:65811
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 4476168 ~ 4493546 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCGAGGTCAAAGTGGCGGCCACGTGACGCACATTGTGGCTGTTAAAAGAGCACGCAGCAAACGTGTACCTGTAGATGTTTTTCTTCCCACTAGGAGcttgaggagagagagagagaccgcgAAAACCTTCAACAAATCCAGACCTCCCCAAGTAACGTTACACGCAGCAAAACATCCCAGTTTTCATCATGGCGCTGGATGGATGTGGCCTCTTCTGCAAGTATACCCTCTTCATTTTCAACGCTATCTTTGCGttGGTGGGCTTTGCCTTTTTGGGTCTCGGCTTGTGGCTGAGGCTCAGCGACAGCACCAGAGGCATCTTTCAAATCGAGGACTTCAACTCAAGTGCATTTGTTATCGctGTGACTGTACTGATTGCTCTGGGCTCAGTGATGCTGATTGTGGTGGTGTTTGGAGACTACGGTGCCTGCAATGAGAAAAGATGTGCTCTGCAAGTGttctCCGCCCTTCTGACCATTCTGGCAATGGCTGAAATTGCTATTGGAGTGGTTGCTTATTCCAGTAAGGAACGGGTTGGACTGCACATTGTGGAGTTCTACGGTAGCCTGTATGCTCTGTATTTGAGTAGCGGAGACCCAGTCATTGGTGCCACTCTCACATTCATCCACAAAATGCTTCATTGCTGTGGAGTGACCGGCGTCGTGGTGATAGAGTTGGCCAAAAACACCTGTCCCAAAGCAGATGGGTTTTGGGAGCAGATCAAGCAGCCTAATTGTCCTCTGATCATCGCAGATGTCTTTAACAGTAAAGCAGCACTGGTGATGGGCATCTTTGTCGGAACGGGAGTTCTTTTGATCATAGCTCTGATTTGCAGCACAACGCTCAGTAGAAAGATCCGTCAGTCTGCCTCATCTCCTCCGTACATCATCCTGACTCACTCCACTTCTGTCGGGGCTAACCCTCAGCTGTCCCAGTGTGAATTTGTCTCCACCTCGTACTCCTACCCTGACCAGAACCCAGTCATCTTCACCCCTCTCTCTATGGCCAACGTCCCTGTGGCTCAGTCTTAGTGCGCTCTTCTTGGTTTTCACTCTTACTTTCATGCGGTCTTGATTTTATTCCACAATACTCATTTATTTACGTTTGTATCCATTCTCTCTTCTCTGCATGGTCACTGCACTGTCGTCTTCAGCTCCCTTATAGGCAAAATCCACCCTAAAAGACCTAAGgcaacattttaacattactgCATCTAATTAAATTGTGCTGCTGgtgtatattttcagactgctctcataaagtggcgtatgtatgacacggcaattcgtatgccgtttttgcgtgtaatcaagacgcataatggctttttagtgtgtttatcaacaccattcggccgccattgacctacattacgtgtgaattttcgctGTAGCGAGAAGTATGAAAAGACGCAAGTcagtggatgggtcaaacacaggactttcacccaagatgAGTttaacagtttttcttttttaaagccttcacattacatgacatttagctgacgcttttatccaaatcgact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205586 lncRNA upstream 37968 4436863 ~ 4438200 (+) True G151743
TU205554 lncRNA upstream 108820 4365234 ~ 4367348 (+) True G151719
TU205545 lncRNA upstream 128347 4347618 ~ 4347821 (+) True G151711
TU205531 lncRNA upstream 129780 4330049 ~ 4346388 (+) True G151697
TU205500 lncRNA upstream 240481 4230520 ~ 4235687 (+) True G151673
TU205598 lncRNA downstream 7191 4498570 ~ 4501011 (+) True G151752
TU205614 lncRNA downstream 126536 4617915 ~ 4632001 (+) True G151767
TU205691 lncRNA downstream 300032 4791411 ~ 4793667 (+) True G151821
TU205707 lncRNA downstream 326956 4818335 ~ 4876140 (+) False G151828
TU205704 lncRNA downstream 327537 4818916 ~ 4822102 (+) False fam234b
XM_039826276.1 mRNA upstream 62994 4406863 ~ 4413174 (+) True LOC120575467
XM_039826266.1 mRNA upstream 72621 4400041 ~ 4403547 (+) False pde6hb
XM_039824379.1 mRNA upstream 129763 4338082 ~ 4346405 (+) False LOC120574173
XM_039825794.1 mRNA downstream 27314 4518693 ~ 4526266 (+) True LOC120575146
XM_039824148.1 mRNA downstream 271594 4762973 ~ 4765557 (+) True fmc1
XM_039824149.1 mRNA downstream 276622 4768001 ~ 4775748 (+) True LOC120574083
XM_039824367.1 mRNA downstream 294042 4785421 ~ 4789529 (+) True LOC120574165
XM_039824370.1 mRNA downstream 314695 4806074 ~ 4822114 (+) True fam234b
TU205566 other upstream 6890 4400030 ~ 4469278 (+) False pde6hb
TU205565 other upstream 20423 4400030 ~ 4455745 (+) False pde6hb
TU205564 other upstream 72306 4400030 ~ 4403862 (+) True pde6hb
XR_005641832.1 other upstream 129763 4338094 ~ 4346405 (+) False LOC120574173
TU205526 other upstream 156670 4318173 ~ 4319498 (+) True G151695
TU205680 other downstream 271607 4762986 ~ 4765548 (+) False fmc1
XR_005641998.1 other downstream 313381 4804760 ~ 4804913 (+) True LOC120575507
TU205710 other downstream 332874 4824253 ~ 4829009 (+) True G151830
TU205771 other downstream 484338 4975717 ~ 4981106 (+) False LOC120575156
TU205926 other downstream 724306 5215685 ~ 5219750 (+) True G151995

Expression Profile