RNA id: TU205707


Basic Information

Item Value
RNA id TU205707
length 2557
lncRNA type sense_over
GC content 0.46
exon number 4
gene id G151828
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 4818335 ~ 4945947 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtttggagcagttggtgaacagtgttttctgttggagatggtaagtccctttgggaggggggggggctttctcactttgtaaacctataaagTGCACAAAacgatatataacacaataaaggaaaggggaaaagccaaaaagcataatatgagcactttaaagcgtTACTGCCGCCCAGTCATATGTTTCGAGTATCGGACGCTCGCTGCCTGTATGCCTGAAAGCTGGCTTTAGAGGATGAACAGCAGCAActtttctaaatgtttttttgctgctgtaAAGACACAGTGAATTTTTAAAGCCACTGCAAAGATAACTCGATTAATTGTCAACTATTACATTAATCGTCAACTATTTTTTATAATAGTCGtcattctctgattccagctttttaaatgtgaatatttggttacattttactttacttttctacataagactgacatgacactgtcatgaacgtgtcctaaaacattataaacaagtcataaacgtttatgacataactctttttttagtgtcattcggttttgtcatgacacgttatggttagggttagggttaaggttagggtcagggttcatgtgtcatgactgtgtcatgacagtgtcatgtcactcttatgtagaaaacttaaagtgttaccgaatatttctagtttcttcactcctctatgacagtaaacCGAATATTTGagctgtggacaaaacaagacattttatagaccaaacaactaatcgattaatcgataatggaaataatggttagttgcagccctggaAGCCACCTTGCAAAGCCACGCCAGTGAGCGTTTGATAATAAAAAGATCTTTTGGATGGAGTAACACGCACTCCCGGGGTGAGGCGACTGACCTCGCCCTCCTGGTCCGAGCGTCAGATCCGGACTCTTGACAGGAAACCATCACGAGCCAACTTTGACACGTTACCGCGCTTTCTTTGATGCACGTCTCCTCTCAAGCACAAGTGAGGACTTCCTGTTTAATCTACTTCTCTTCATCTGTCTATGTACAACCTATATACAATCACATTGTGAGTTTGTATCtaattaattaaatatgtatatgggtctgtgtgagtgtgtttgtagGTAGGCATTTTCAAACTTATCGGCCCATTACTGGCTGCTTCCCTCGGTTATTTAGGTATTCCGCAAATCAAATAATCTTCTCAGCTGTAGCGGTCATTTCTGCGACAGCAAGTCAAATCCCTAGAGTGCTTTAGGGATGCCCCCTAAAGTCTAAGTAATGCAGCTCAGGAAGGTTTTATTAGAATGACGCTGCGTTGGACTGAAGCATCAAATGGTCAGTTAATTCAAATTCAGGATAACTGACGGGGTGCTTAAGTATCCTACTTTGCTCCACAGTACAGTGCTGGCATTGTACTGTGTATGAGGTAGATAAGAAGGGACACTACTCAGCACTGAATGGTTATAAGCGAGCTAGTCTATCTAGTCTGCATCCTACACTCTCTGACGCCCCTTTAAATTGAAGCTTGCAAATTTAATGAGACATCACGCAGTTACGTGGGACTCACATTGCCGTGTGCCAATAATGATTGTACAGCTCGGTATCCTACAGCTAAGCAATGCTCTGCTGCATTGCGTTCATTTAAAACAGCTATTAGAGAATGGTCCCTTTTCCCTTTGGGCCCTGTTGAACCTGATTTTGCTCATTGTGTAGCATTGTTAAACATGAGGCAGCGAGCCTAGCACGGTACCATTAATGACCAGAAGGTGGAATGATTGTGCTGCAACAATGAAACTAAGCATCGAAAGAAGCAAGTGTGAGGCCTGAAGTGTTTCAGCTGCAGGTGTGGGAACGGTGACAGTAAACtaaatcagctgtgtgtgtatgagaaaaGTGTAGCAGTTTGAAGAAAAGTCTTTATAATCATGGCCCTTGATCAAATTGTGGTTTGAGGTTGTGGGTGAGTAGACTGGTTTACATCTTTGTATGTATGTAGCAAATTACAGAGTTCATTCTGAGTAGCcctaatctgtgtgtgtgtgtgtgtgggtgtgtgtgtgtgtgtgtgttcaggaggCCGCGATGGTCGTGCCCCCGCTGAGGCGCAGCAGGATCTGCTGACAGTCCTGCAGGGACCGACGGTCTCCCACCCGCTCCAGGGTGCGCTTGGCCTCGGCCAGCAGGCGAGTGCGATGCCCGGGCGGGGTTAGCAGGGGCATGGGCAGGTGGCGGCAGGCCAGGAGGATGGCATGAGCCCTCTCCCTCTCACCCAGGACACACTCACCTTCGGCCGTGTAAGAGTTGTGTGTCCTGCGTCGGAGGTTGTGCTCCAGCAGCTGGTGTGTCCTTGTGGGACTGGCTCCGGCCATCAGCCTCACTGTGGTCTCATGGAGAAACACCTTGTGCTGCGCCTGTCTGTAGCACTGTGTGAGCTTTCTGAGCGCGCTGAGGTCCCTCTGGAAACCAGCCAACTGGGATCCAGGAGCCGGGCCAGGCTCTCCGTTACTGCTGCCTCCCCGCTGCCATAAACTGGTCCTCAACGTCAGCAGAAGGTCACAGATCAGGAGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205691 lncRNA upstream 24668 4791411 ~ 4793667 (+) True G151821
TU205614 lncRNA upstream 186334 4617915 ~ 4632001 (+) True G151767
TU205590 lncRNA upstream 302885 4464468 ~ 4515450 (+) True G151746
TU205598 lncRNA upstream 317324 4498570 ~ 4501011 (+) True G151752
TU205586 lncRNA upstream 380135 4436863 ~ 4438200 (+) True G151743
TU205739 lncRNA downstream 8544 4884684 ~ 4885322 (+) True G151851
TU205967 lncRNA downstream 478690 5354830 ~ 5358836 (+) True G152022
TU205975 lncRNA downstream 485430 5361570 ~ 5362464 (+) True LOC120575483
XR_005641997.1 lncRNA downstream 485574 5361714 ~ 5362432 (+) False LOC120575483
TU205948 lncRNA downstream 490920 5367060 ~ 5433126 (+) True G152008
XM_039824367.1 mRNA upstream 28806 4785421 ~ 4789529 (+) True LOC120574165
XM_039824149.1 mRNA upstream 42587 4768001 ~ 4775748 (+) True LOC120574083
XM_039824148.1 mRNA upstream 52778 4762973 ~ 4765557 (+) True fmc1
XM_039825794.1 mRNA upstream 292069 4518693 ~ 4526266 (+) True LOC120575146
XM_039824499.1 mRNA upstream 326956 4476168 ~ 4491379 (+) False zgc:65811
XM_039825805.1 mRNA downstream 99561 4975701 ~ 4994521 (+) True LOC120575156
XM_039823817.1 mRNA downstream 120064 4996204 ~ 4998999 (+) True LOC120573903
XM_039825671.1 mRNA downstream 137359 5013499 ~ 5027771 (+) True LOC120575072
XM_039825672.1 mRNA downstream 167081 5043221 ~ 5052323 (+) False sox10
XM_039825675.1 mRNA downstream 167093 5043233 ~ 5052323 (+) False sox10
XR_005641998.1 other upstream 13422 4804760 ~ 4804913 (+) True LOC120575507
TU205680 other upstream 52787 4762986 ~ 4765548 (+) False fmc1
TU205566 other upstream 349057 4400030 ~ 4469278 (+) False pde6hb
TU205565 other upstream 362590 4400030 ~ 4455745 (+) False pde6hb
TU205564 other upstream 414473 4400030 ~ 4403862 (+) True pde6hb
TU205771 other downstream 99577 4975717 ~ 4981106 (+) False LOC120575156
TU205926 other downstream 339545 5215685 ~ 5219750 (+) True G151995
unassigned_transcript_717 other downstream 413781 5289921 ~ 5289993 (+) True trnar-ccu_4
TU205974 other downstream 483514 5359654 ~ 5361295 (+) True G152024
TU205981 other downstream 494810 5370950 ~ 5377739 (+) True G152028

Expression Profile