LOC120575483


Basic Information

Item Value
gene id LOC120575483
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 5361570 ~ 5362464 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU205975
CTCAGCTACCTCACTTCTTTTCCTCCCGTCTTCACCACTGATTGGCTCTTGTTTCCACCCTGATTACCTGATTGAGTTCACCTGCTCACTCCTTATTTAAGACTGCACtccctctcagtcactctcttTTCCACCTTCACATGGGGCGGCAGCTGTCGACCGCTCCAGCTAGGGACCCCAAATTTCCCTTTCCCTGAGccccagctctgactggggcatcccgaggcgttcccaggccaggttggagattgGTTCCAAAGCCCCTATGATTGAACGAGGAAGAGGTAGAGTGACCCTGCctggaggaagcccggggcccccgtctggagccaggcccagatggagggCTCGTCGGTGagcgtctggtggccgggtttgccacggagaaGCAAGCATGGGCCCagcacctgtgggaggaaccacTGGGCTGCCAcacgggtggcagtgaaggtcagggggcTTCGACTGACCAGACCCGGGTGGCAGAGGCTGCCTCTCTGGGGGGGGAAGGAGCCAGAACTTGTGCAGGAGGTGGAGTTCACCCCGATTCTCCAACCCATGTGTCTGTTATGTTATGCATTATCATTTGCTCACCCTTATGTTAAATAAATCTTTGTTGAATGAACTGAACTCTGTGGCTCACTCCTGCATTCTGACCGATGGCAATCATCTCTAAAACTGACCCCTcctccttaacccttgtgttgtcttcccg
>XR_005641997.1
GGCGGCAGCTGTCGACCGCTCCAGCTAGGGACCCCAAATTTCCCTTTCCCTGAGccccagctctgactggggcatcccgaggcgttcccaggccaggttggagattgGTTCCAAAGCCCCTATGATTGAACGAGGAAGAGGTAGAGTGACCCTGCctggaggaagcccggggcccccgtctggagccaggcccagatggagggCTCGTCGGTGagcgtctggtggccgggtttgccacggagaaGCAAGCATGGGCCCagcacctgtgggaggaaccacTGGGCTGCCAcacgggtggcagtgaaggtcagggggcTTCGACTGACCAGACCCGGGTGGCAGAGGCTGCCTCTCTGGGGGGGGAAGGAGCCAGAACTTGTGCAGGAGGTGGAGTTCACCCCGATTCTCCAACCCATGTGTCTGTTATGTTATGCATTATCATTTGCTCACCCTTATGTTAAATAAATCTTTGTTGAATGAACTGAACTCTGTGGCTCACTCCTGCATTCTGACCGATGGCAATCATCTCTAAAACTGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU205975 True 715 lncRNA 0.56 3 5361570 5362464
XR_005641997.1 False 539 lncRNA 0.58 3 5361714 5362432

Neighbor

gene id symbol gene type direction distance location
LOC120575092 pmm1 coding upstream 13944 5333449 ~ 5347626 (+)
LOC120575090 NA coding upstream 51978 5303860 ~ 5309592 (+)
plbd1a plbd1 coding upstream 58496 5290118 ~ 5303074 (+)
trnar-ccu_4 NA coding upstream 71577 5289921 ~ 5289993 (+)
pick1 pick1 coding upstream 71819 5279647 ~ 5289751 (+)
LOC120575346 tob2 coding downstream 24041 5386505 ~ 5395774 (+)
rangap1a rangap1 coding downstream 76043 5438507 ~ 5452636 (+)
chadla chadl,LOC103370796 coding downstream 91179 5453643 ~ 5461263 (+)
trnaq-cug_13 NA coding downstream 99225 5461689 ~ 5461760 (+)
xpnpep3 xpnpep3,LOC102784555 coding downstream 115642 5478106 ~ 5495588 (+)
G152022 NA non-coding upstream 2734 5354830 ~ 5358836 (+)
G151828 srebf2 non-coding upstream 415623 4818335 ~ 4945947 (+)
G151851 srebf2 non-coding upstream 476248 4884684 ~ 4885322 (+)
G151845 NA non-coding upstream 494928 4864722 ~ 4866642 (+)
G151821 rrp7a,LOC107673310,LOC107591059,LOC107569875 non-coding upstream 567903 4791411 ~ 4793667 (+)
G152008 NA non-coding downstream 4596 5367060 ~ 5433126 (+)
G152040 LOC104949869 non-coding downstream 65931 5428395 ~ 5429186 (+)
G152115 NA non-coding downstream 103821 5466285 ~ 5469095 (+)
LOC120575023 NA non-coding downstream 195161 5557625 ~ 5562390 (+)
G152148 NA non-coding downstream 271023 5633487 ~ 5633861 (+)
G152024 NA other upstream 275 5359654 ~ 5361295 (+)
G151995 NA other upstream 141820 5215685 ~ 5219750 (+)
LOC120575156 LOC102785031,LOC103371174,LOC107096643 other upstream 367049 4975701 ~ 4994521 (+)
G151830 ndufa6 other upstream 532561 4824253 ~ 4829009 (+)
fam234b fam234b,LOC104962864 other upstream 539456 4806074 ~ 4822114 (+)
G152028 aco2,LOC103370792 other downstream 8486 5370950 ~ 5377739 (+)
rbx1 rbx1 other downstream 99475 5461939 ~ 5464303 (+)
G152125 NA other downstream 171392 5533856 ~ 5550546 (+)
slc29a4 slc29a4,LOC107104199,LOC107105090 other downstream 263743 5626207 ~ 5647190 (+)
G152149 actb,LOC107581721,LOC102799139 other downstream 363422 5725886 ~ 5771867 (+)

Expression


Co-expression Network