chadla (chadl,LOC103370796)


Basic Information

Item Value
gene id chadla
gene name chadl,LOC103370796
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 5453643 ~ 5461263 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039824479.1
GCACAGATGCTTTTCTTCTCTGCTGTGGCCCTCCTGCTGGTCTTAGCGCTGAGTTCAGCCGTTGAAGCAGGCAGATGTCCCAGAGTGTGCAGCTGTGACAGCACCAAGCTCGCGGTCACCTGTGTTGGCAAGAACTTAACGGAGATTCCCCCGACTGTAGAGGAGATTACAGTGAAACTTGACCTGAggaacaacaacctgcaggtgcTGCCCAGGGGGGCGTTCGCCCTCACACCCTACCTCACCCACCTCAACCTGCAGCGCTGCAACATCATCAAGGTGAAGGAGGGCGCTTTCCGGACCCTGGGGCGCCTGGTCTCCCTAAACATGGCCTACAACAAAATCGACGTCCTCTATCAGGAGTCCTTTGACGGCCTCTCCTCCTTGAAGGAGCTGCACCTGGACCATAACCGTGTGGAAGAGATCCAGCCTGGAGCCTTCACACAGCTCGGGTTCCTCAACATGCTGGCCCTCACCCACAACCAGCTAGTTTACATCCCTAACATGGCCTTCCAGGGCCTGAACAACATCAAGTGGCTTCGTCTCAGCCATAACGCCCTGAACAACTTGGACCCCGAGGCCTTCGCTGGACTGTTCACCCTGAGCCGCCTCAGCCTGGACCACAACGAGCTGCAGTTCTTCCCCACTCAGACCATGACCAGACCCCCTGAGGTCACGCGCCTGGACATGAGCCACAACCCCATGACCTACCTCGGGGAGGAATCCGTCTCCATGCCGAAGCTTACACACCTCTACCTCGACCACATGTCCCTTCAGGACCTGTCTGATCAGGCTTTGTCCCGCGCCCCCCTCCTCTCCCATTTGGACCTCAGCCACAATCAGCTTCGTTACCTGAAGCCCCTCTCAGGCCCCGAGGAGCTGACCAGCCTCAACTTGACAGGCAACCCAGTGTACTGTAACTGCTACATGCGGCCCCTGAGGGGGTGGGCGAGTGTCCGTGGTGTGAAGCTGCTGGGGGCCTGCGCTGGACCACCTCACCTCTCAGAGGAGCCGCTGCAGGCCCTGGTTCCTCTGGATCTGCGCTGCCGCAGCAGGGAGGAGACGCTGAAGGCTGAGTTTGAGAAGGATGATGAGAGCACAGGAAGCATCCCACCCACAGCCAAACCCAAGCAGAAAGTCAAGTGTCCCGTTAACTGTGACTGTGATATTGAAGCCCAGCACGCCACATGTGAGGGTCGGGGTCACACCAAAGTCCCACGAGGCTTCCCCACTAAGACACAGCTGCTTGACCTCCGCAGCAACCACTTCCACTACCTTCCTGCCAACAGCTTCCCAGGCACCAGCCAAGTTGTTTCTCTTCACCTGGAGTTGTGCAAAATCCACGAAATCGAAGGCGGTGCCTTTCGGGGAATGAGAAacctgttttatttatatctttCTGACAATGACCTCACATCCTTGGACCCCAGAGCCTTTGCTGGAGCCCCAGAGCTCAACTACCTTCACCTGGAAGGGAACCGACTGATACAGTTCCCCGGATCAGCTCTGGCACTCTTACCAAGTCTGTTTGTGTTACACTTGGAGCGAAATGCCATCTCCAAACTGGAGCCCACTGGTTTGCTGTCCTCAGTAACACCTAAACTTCAGGAACTTTTCTTGACCAAcaacaccataactgctatTGCCAAGGGGGCCCTGGACTCTGCTTTCCTCGGTGCACTTCATCTGGATTCAAATCAGCTGACGGAGATCCCTACCCAGGCTCTGTCCGAGAACCCTAACCTGGAGGAACTCAACCTGTCGCAGAATTCAATTCGCTGGGTGGGACCAAACGCATTCAAGCCCATATCTCACAGTCTGAAGAGGCTTTACATGGACCAGATGGGCATGGAGAAGATGTCCAGGGACGCTCTGGCAGGGCTGGGCCCAGGGCTGAGGGCTCTGACTGTGAGAGGAAACCAGCTGGAGGAGCTTCCTGACCTGAGCCCCCTCACCGGCCTGCAGGTGGTCGACCTGCAGGACAACCCCCTGCTGTGTGACTGTCCTCTGCTGCCGCTACGCAGgtGGCTGGAGAATGTAAGTTTGGAGGTGATCGCCACCTGTGGTCACCCTcctgaggtcagaggtcagaatATCAGGGACGTCCACGTGTTCACGTCCTGCCCAGAAAGCAGCGCTCCTCCAGACGAGAGGGTTGTTGTGGCCCCGACACCTCCAAATGTGAAGAAAACCAAAGCCAGCTTCTCGAAGGAACCTGGAGTCAAACCTAGGCCTGCAAAGCCCAAAGCTAAACTACCCAAACCAACGAAGAACAAGCCTCAGAGGAAACCTGTGGCGCCCAAAGTGATAAAGAACAAGAAGACACTGTAATACGTGAATTTAACAAATTAAAAGTGTGAAGATCATGTTTCAAAATTAAAGAGCTTAAGATTATCTTGTGGAATTTACATGCACtattatactatactatctgagcataaacacagcaaagaaaagaaggaaaagaaaagaaagaagcaaCCTGAGTACCCAGTCTATTGCCTTCCCAATCCTGCAGGAGATATACATTGATGGGATTTGCTTGACAGATAGACAACCATATCTTCAACacagcctgggtctgtctgaggtttcttcctaaaaagggagtcactggaatt

Function

symbol description
chadl Enables collagen binding activity and collagen fibril binding activity. Involved in negative regulation of collagen fibril organization. Located in collagen-containing extracellular matrix.

NR:

description
PREDICTED: chondroadherin-like protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039824479.1 True 2621 mRNA 0.54 10 5453643 5461263

Neighbor

gene id symbol gene type direction distance location
rangap1a rangap1 coding upstream 1007 5438507 ~ 5452636 (+)
LOC120575346 tob2 coding upstream 57869 5386505 ~ 5395774 (+)
LOC120575092 pmm1 coding upstream 106017 5333449 ~ 5347626 (+)
LOC120575090 NA coding upstream 144051 5303860 ~ 5309592 (+)
plbd1a plbd1 coding upstream 150569 5290118 ~ 5303074 (+)
trnaq-cug_13 NA coding downstream 426 5461689 ~ 5461760 (+)
xpnpep3 xpnpep3,LOC102784555 coding downstream 16843 5478106 ~ 5495588 (+)
ep300b LOC100700725 coding downstream 36687 5497950 ~ 5532262 (+)
smcr8a smcr8,LOC102303222,LOC102212603,LOC102782846 coding downstream 107322 5568585 ~ 5578672 (+)
pdap1b pdap1,LOC102785718 coding downstream 121997 5583260 ~ 5587770 (+)
G152008 NA non-coding upstream 20517 5367060 ~ 5433126 (+)
G152040 LOC104949869 non-coding upstream 24457 5428395 ~ 5429186 (+)
LOC120575483 NA non-coding upstream 91179 5361570 ~ 5362464 (+)
G152022 NA non-coding upstream 94807 5354830 ~ 5358836 (+)
G151851 srebf2 non-coding upstream 568321 4884684 ~ 4885322 (+)
G152115 NA non-coding downstream 5022 5466285 ~ 5469095 (+)
LOC120575023 NA non-coding downstream 96362 5557625 ~ 5562390 (+)
G152148 NA non-coding downstream 172224 5633487 ~ 5633861 (+)
G152154 tnrc18,LOC102789128 non-coding downstream 211183 5672446 ~ 5673600 (+)
G152179 smurf1 non-coding downstream 332861 5794124 ~ 5830663 (+)
G152028 aco2,LOC103370792 other upstream 75904 5370950 ~ 5377739 (+)
G152024 NA other upstream 92348 5359654 ~ 5361295 (+)
G151995 NA other upstream 233893 5215685 ~ 5219750 (+)
LOC120575156 LOC102785031,LOC103371174,LOC107096643 other upstream 459122 4975701 ~ 4994521 (+)
G151830 ndufa6 other upstream 624634 4824253 ~ 4829009 (+)
rbx1 rbx1 other downstream 676 5461939 ~ 5464303 (+)
G152125 NA other downstream 72593 5533856 ~ 5550546 (+)
slc29a4 slc29a4,LOC107104199,LOC107105090 other downstream 164944 5626207 ~ 5647190 (+)
G152149 actb,LOC107581721,LOC102799139 other downstream 264623 5725886 ~ 5771867 (+)
chst12a chst12,LOC103360067,LOC100699819,LOC101072910 other downstream 489161 5950424 ~ 5957317 (+)

Expression


Co-expression Network