rbx1 (rbx1)


Basic Information

Item Value
gene id rbx1
gene name rbx1
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 5461939 ~ 5464303 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU206083
TAAACTCGTCATAAACTTCTCCTTTCAAGATGGCAGCAGCTATGGATGTAGATACGCCAAGCGGCACAAACAGTGGAGCTAGCAAAAAGCGATTTGAAGTAAAGAAGTGGAATGCTGTGGCACTGTGGGCCTGGGACATCGTGGTGGATAACTGCGCTATCTGTCGGAACCACATCATGGATCTCTGTATAGAGTGCCAGGCCAACCAAGCTTCTGCAACCTCTGAGGAGTGCACTGTAGCCTGGGGTGTCTGCAACCATGCCTTCCATTTCCACTGTATTTCCCGCTGGCTGAAAACCAGACAGGTGTGCCCTCTGGACAACAGGGAGTGGGAGTTTCAGAAATACGGACACTAGCTGTATTGTTGCTGACCTGTTTTCTTGGCTACTACAAGTGTCACCTTCTCTGTTCCCTCCCACTTGTAAGCCTAGTTGTTCTTTTACACCCATGTCTTTGTTTTGGTATGTTGtaagtacacaaataaacattaatgtTGTCACAAAT
>XM_039824483.1
AAATTGCTGTGTTTCTTCCGGGTAAATAAACTCGTCATAAACTTCTCCTTTCAAGATGGCAGCAGCTATGGATGTAGATACGCCAAGCGGCACAAACAGTGGAGCTAGCAAAAAGCGATTTGAAGTAAAGAAGTGGAATGCTGTGGCACTGTGGGCCTGGGACATCGTGGTGGATAACTGCGCTATCTGTCGGAACCACATCATGGATCTCTGTATAGAGTGCCAGGCCAACCAAGCTTCTGCAACCTCTGAGGAGTGCACTGTAGCCTGGGGTGTCTGCAACCATGCCTTCCATTTCCACTGTATTTCCCGCTGGCTGAAAACCAGACAGGTGTGCCCTCTGGACAACAGGGAGTGGGAGTTTCAGAAATACGGACACTAGCTGTATTGTTGCTGACCTGTTTTCTTGGCTACTACAAGTGTCACCTTCTCTGTTCCCTCCCACTTGTAAGCCTAGTTGTTCTTTTACACCCATGTCTTTGTTTTGGTATGTTGtaagtacacaaataaacattaatgtTGTCACAAA

Function

symbol description
rbx1 Predicted to enable cullin family protein binding activity and ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to be part of cullin-RING ubiquitin ligase complex. Predicted to be active in nucleus. Is expressed in female organism. Orthologous to human RBX1 (ring-box 1).

NR:

description
RING-box protein 1-like

GO:

id name namespace
GO:0045116 protein neddylation biological_process
GO:0006950 response to stress biological_process
GO:0006513 protein monoubiquitination biological_process
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process biological_process
GO:0019005 SCF ubiquitin ligase complex cellular_component
GO:0005634 nucleus cellular_component
GO:0031463 Cul3-RING ubiquitin ligase complex cellular_component
GO:0031464 Cul4A-RING E3 ubiquitin ligase complex cellular_component
GO:0031465 Cul4B-RING E3 ubiquitin ligase complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0019788 NEDD8 transferase activity molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K03868 RBX1, ROC1; E3 ubiquitin-protein ligase RBX1

RNA

RNA id representative length rna type GC content exon number start site end site
TU206083 False 504 TUCP 0.47 5 5461965 5464303
XM_039824483.1 True 529 mRNA 0.47 5 5461939 5464302

Neighbor

gene id symbol gene type direction distance location
trnaq-cug_13 NA coding upstream 179 5461689 ~ 5461760 (+)
chadla chadl,LOC103370796 coding upstream 676 5453643 ~ 5461263 (+)
rangap1a rangap1 coding upstream 9303 5438507 ~ 5452636 (+)
LOC120575346 tob2 coding upstream 66165 5386505 ~ 5395774 (+)
LOC120575092 pmm1 coding upstream 114313 5333449 ~ 5347626 (+)
xpnpep3 xpnpep3,LOC102784555 coding downstream 13803 5478106 ~ 5495588 (+)
ep300b LOC100700725 coding downstream 33647 5497950 ~ 5532262 (+)
smcr8a smcr8,LOC102303222,LOC102212603,LOC102782846 coding downstream 104282 5568585 ~ 5578672 (+)
pdap1b pdap1,LOC102785718 coding downstream 118957 5583260 ~ 5587770 (+)
shmt1 shmt1,LOC106933460,LOC107104202 coding downstream 126161 5590464 ~ 5601974 (+)
G152008 NA non-coding upstream 28813 5367060 ~ 5433126 (+)
G152040 LOC104949869 non-coding upstream 32753 5428395 ~ 5429186 (+)
LOC120575483 NA non-coding upstream 99475 5361570 ~ 5362464 (+)
G152022 NA non-coding upstream 103103 5354830 ~ 5358836 (+)
G151828 srebf2 non-coding upstream 515992 4818335 ~ 4945947 (+)
G152115 NA non-coding downstream 1982 5466285 ~ 5469095 (+)
LOC120575023 NA non-coding downstream 93322 5557625 ~ 5562390 (+)
G152148 NA non-coding downstream 169184 5633487 ~ 5633861 (+)
G152154 tnrc18,LOC102789128 non-coding downstream 208143 5672446 ~ 5673600 (+)
G152179 smurf1 non-coding downstream 329821 5794124 ~ 5830663 (+)
G152028 aco2,LOC103370792 other upstream 84200 5370950 ~ 5377739 (+)
G152024 NA other upstream 100644 5359654 ~ 5361295 (+)
G151995 NA other upstream 242189 5215685 ~ 5219750 (+)
LOC120575156 LOC102785031,LOC103371174,LOC107096643 other upstream 467418 4975701 ~ 4994521 (+)
G151830 ndufa6 other upstream 632930 4824253 ~ 4829009 (+)
G152125 NA other downstream 69553 5533856 ~ 5550546 (+)
slc29a4 slc29a4,LOC107104199,LOC107105090 other downstream 161904 5626207 ~ 5647190 (+)
G152149 actb,LOC107581721,LOC102799139 other downstream 261583 5725886 ~ 5771867 (+)
chst12a chst12,LOC103360067,LOC100699819,LOC101072910 other downstream 486121 5950424 ~ 5957317 (+)
dexi dexi,LOC107590611 other downstream 1805825 7270128 ~ 7274611 (+)

Expression


Co-expression Network