G152179 (smurf1)


Basic Information

Item Value
gene id G152179
gene name smurf1
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 5794124 ~ 5830663 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU206194
ACTTTATTAGAAAATTGTGTGGTCTCAcacctgttgcacaaaagttaCAGAAGGGAATGCTAActggttttattttcaattatgtactcaaaaatatatgtataaactGGAAATAAATCGTCTCAAGATTCTAAACCGTTCATCAGTTCAAccccaaacagaaaaaaagatgaataaaaggAACATGTAACGTAGCGTTTTGCTTCATTATTGAAGTCCCAAGTTCAGCGGGAGAAGGCAAAGTGTCTAAATGTGTGGCTCTCGTTCCACAGATGCACTTTTCATTTCAGCGCGTTTCATCAGATCAACTCAGAAGAATATCCAAAATCTGCATGAGCACGCAAACCAGGAAAAAGGATAGAGAGAAGGAGTAGAAAACGGTGATGCACACTGAAAGAGATACAAAATAACATCTCAAAAAACAGCACTGAAATGAAAAGCAGAACTGTAGAGAGcgagcgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgtgcgtgtaccTGATAATGGTGTGTAGGCGCGGGTCTGTGAACTGTGTTGTTCGGTTGTTGTGGTCCACAAAGTAGATCCGGCCCGACACAGTGCTTCGGACCTCCCAGCCCACTGGCAGCGGCCCAAGCTCCTCACAGCTCACACTGGCCAGGTCCCGCGGTATTCGAGGGTCGTGCCAGGTGCTGACGCCCGTCTGTGTGTGAAGGAAGTACACCTGGCCCTGCACTGTTGTTCGTTGCTCGTATCCCTCTGGCAGATCAGGCGGTTGGTGCCCATGCGGTCTGTTCTGAGGGGTGTGGCCATGGCCTCTGGAGTCCTGCCCTCTGATTCTCTGCGTCTGAAGACGGCCCTCCTGACCGGGTGAGTCGAGCCGACAGTTCCCACCCCCCGCCGCACCAGTGGGGTCGGAGTAGGGTAGCGGCTCTTCACTGAAACATCCCTCGAAcacaggcctacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaca

Function

symbol description
smurf1 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in several processes, including negative regulation of BMP signaling pathway; protein polyubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within ubiquitin-dependent protein catabolic process. Predicted to be active in cytoplasm. Is expressed in alar plate midbrain region; axis; midbrain; neural plate; and notochord. Orthologous to human SMURF1 (SMAD specific E3 ubiquitin protein ligase 1).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase SMURF1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU206194 True 1091 lncRNA 0.50 4 5794124 5830663

Neighbor

gene id symbol gene type direction distance location
fscn1a fscn1 coding upstream 12344 5762984 ~ 5781780 (+)
cpsf4 cpsf4 coding upstream 183660 5602468 ~ 5610464 (+)
shmt1 shmt1,LOC106933460,LOC107104202 coding upstream 192150 5590464 ~ 5601974 (+)
pdap1b pdap1,LOC102785718 coding upstream 206354 5583260 ~ 5587770 (+)
smcr8a smcr8,LOC102303222,LOC102212603,LOC102782846 coding upstream 215452 5568585 ~ 5578672 (+)
LOC120573990 LOC103393299 coding downstream 14462 5845125 ~ 5872088 (+)
mmd2a mmd2 coding downstream 57090 5887753 ~ 5904882 (+)
card11 card11 coding downstream 88203 5918866 ~ 5944181 (+)
LOC120575455 LOC103358546,LOC101474779,LOC100705581,LOC102298191,LOC102212168,LOC108236189 coding downstream 192571 6023234 ~ 6034080 (+)
mief1 mief1,LOC102791538 coding downstream 206595 6037258 ~ 6041651 (+)
G152154 tnrc18,LOC102789128 non-coding upstream 120524 5672446 ~ 5673600 (+)
G152148 NA non-coding upstream 160263 5633487 ~ 5633861 (+)
LOC120575023 NA non-coding upstream 231734 5557625 ~ 5562390 (+)
G152115 NA non-coding upstream 325029 5466285 ~ 5469095 (+)
G152008 NA non-coding upstream 360998 5367060 ~ 5433126 (+)
G152201 NA non-coding downstream 43101 5873764 ~ 5874303 (+)
G152336 LOC102224681,LOC103147375,LOC103393291,LOC107583318,LOC105890774,LOC107672151,LOC107695138,LOC107748796 non-coding downstream 169466 6000129 ~ 6002642 (+)
G152350 NA non-coding downstream 186554 6017217 ~ 6017471 (+)
G152387 NA non-coding downstream 263256 6093919 ~ 6094215 (+)
G152415 NA non-coding downstream 318602 6149265 ~ 6149583 (+)
G152149 actb,LOC107581721,LOC102799139 other upstream 22257 5725886 ~ 5771867 (+)
slc29a4 slc29a4,LOC107104199,LOC107105090 other upstream 146934 5626207 ~ 5647190 (+)
G152125 NA other upstream 243578 5533856 ~ 5550546 (+)
rbx1 rbx1 other upstream 329821 5461939 ~ 5464303 (+)
G152028 aco2,LOC103370792 other upstream 416385 5370950 ~ 5377739 (+)
chst12a chst12,LOC103360067,LOC100699819,LOC101072910 other downstream 119761 5950424 ~ 5957317 (+)
dexi dexi,LOC107590611 other downstream 1439465 7270128 ~ 7274611 (+)
emp2 emp2 other downstream 1509322 7339985 ~ 7356838 (+)
G152892 NA other downstream 2296602 8127265 ~ 8127981 (+)
mcrip1 mcrip1 other downstream 2614757 8445420 ~ 8449305 (+)

Expression


Co-expression Network