G152154 (tnrc18,LOC102789128)


Basic Information

Item Value
gene id G152154
gene name tnrc18,LOC102789128
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 5672446 ~ 5673600 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU206168
CTCTCTGGCCTTGGTCTTGGCTTTTTGTTGGCTCTTGCGAGCCGGGCTGAGGCTCAGGGGCGCAGGGGTGCCGGTGATTGGACTGCACAGAGTGGACGGGCTCACGGGCAGAGGAGAGTCCTTCAGCTTCTTTTTCTTTGACCACAtctttcccctctctgctgGGCGGAGAGGCTTTGGGTCTGGAGGCTGGCTTCGGGGTCAGAGGTGGGgctgagctggaggaggagctcTGACTGGTGGAAGCGGAGGCCGACGCGGGCATCGGACTGGCTGAGGTGGTGGCATCGTGGAGGAAGATCCTCTCGCTGCGTCGCCGCGTCCAGCCCTCGTCCTCGCTGAAGCCTCCGAACCCGCAGGCGGAGGCGGAGGGGAGGTCGAAGCTGAACGATCGCGGCGACCGGGGCGTGGGCCGCGGCTTGGGCAGAGGCTTGCGTTTGACTGGCAGAGAGTCATCTCGCTTTGAGGGGCTGGTCTGGTCGATGCGGCGGGTTGCCGGGGGCAACAGGGGGAGCTCTGGGGCGGAGCGTTTGCCGTGCAGCAGAGAGGGGAACTTCCTGAGTCGTATGTCCGAGCCAGAGTCTGACCACTCA

Function

symbol description
tnrc18 Predicted to enable chromatin binding activity. Is expressed in hypothalamus. Orthologous to human TNRC18 (trinucleotide repeat containing 18).

NR:

description
PREDICTED: trinucleotide repeat-containing gene 18 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU206168 True 593 lncRNA 0.65 2 5672446 5673600

Neighbor

gene id symbol gene type direction distance location
cpsf4 cpsf4 coding upstream 61982 5602468 ~ 5610464 (+)
shmt1 shmt1,LOC106933460,LOC107104202 coding upstream 70472 5590464 ~ 5601974 (+)
pdap1b pdap1,LOC102785718 coding upstream 84676 5583260 ~ 5587770 (+)
smcr8a smcr8,LOC102303222,LOC102212603,LOC102782846 coding upstream 93774 5568585 ~ 5578672 (+)
ep300b LOC100700725 coding upstream 140184 5497950 ~ 5532262 (+)
fscn1a fscn1 coding downstream 89384 5762984 ~ 5781780 (+)
LOC120573990 LOC103393299 coding downstream 171525 5845125 ~ 5872088 (+)
mmd2a mmd2 coding downstream 214153 5887753 ~ 5904882 (+)
card11 card11 coding downstream 245266 5918866 ~ 5944181 (+)
LOC120575455 LOC103358546,LOC101474779,LOC100705581,LOC102298191,LOC102212168,LOC108236189 coding downstream 349634 6023234 ~ 6034080 (+)
G152148 NA non-coding upstream 38585 5633487 ~ 5633861 (+)
LOC120575023 NA non-coding upstream 110056 5557625 ~ 5562390 (+)
G152115 NA non-coding upstream 203351 5466285 ~ 5469095 (+)
G152008 NA non-coding upstream 239320 5367060 ~ 5433126 (+)
G152040 LOC104949869 non-coding upstream 243260 5428395 ~ 5429186 (+)
G152179 smurf1 non-coding downstream 120524 5794124 ~ 5830663 (+)
G152201 NA non-coding downstream 200164 5873764 ~ 5874303 (+)
G152336 LOC102224681,LOC103147375,LOC103393291,LOC107583318,LOC105890774,LOC107672151,LOC107695138,LOC107748796 non-coding downstream 326529 6000129 ~ 6002642 (+)
G152350 NA non-coding downstream 343617 6017217 ~ 6017471 (+)
G152387 NA non-coding downstream 420319 6093919 ~ 6094215 (+)
slc29a4 slc29a4,LOC107104199,LOC107105090 other upstream 25256 5626207 ~ 5647190 (+)
G152125 NA other upstream 121900 5533856 ~ 5550546 (+)
rbx1 rbx1 other upstream 208143 5461939 ~ 5464303 (+)
G152028 aco2,LOC103370792 other upstream 294707 5370950 ~ 5377739 (+)
G152024 NA other upstream 311151 5359654 ~ 5361295 (+)
G152149 actb,LOC107581721,LOC102799139 other downstream 52286 5725886 ~ 5771867 (+)
chst12a chst12,LOC103360067,LOC100699819,LOC101072910 other downstream 276824 5950424 ~ 5957317 (+)
dexi dexi,LOC107590611 other downstream 1596528 7270128 ~ 7274611 (+)
emp2 emp2 other downstream 1666385 7339985 ~ 7356838 (+)
G152892 NA other downstream 2453665 8127265 ~ 8127981 (+)

Expression


Co-expression Network